Back to structures

FFC_09252017_16_scaffold_2_prodigal-single.1__X__X__00156

Bact-Vir

FFC_09252017_16_scaffold_2_prodigal-single.1__X__X__00156

Identity

Kingdom:
phage

Quality

64.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-192
PDB
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wruA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.80 37.0 3.94e-01 89.0% 49.1%
3cddA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.72 37.0 3.81e-01 89.5% 51.1%
2x8kA01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.71 37.0 4.95e-01 91.1% 92.4%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.70 36.0 4.98e-01 87.4% 97.9%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.65 34.0 4.07e-01 85.9% 74.4%
3d37B01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.65 34.0 3.62e-01 88.0% 54.0%
3w57A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.65 30.0 3.83e-01 94.2% 73.9%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.64 42.0 4.95e-01 91.6% 92.7%
5hccB03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 32.0 4.00e-01 84.3% 78.5%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 35.0 4.01e-01 90.6% 80.3%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.54 35.0 4.10e-01 90.6% 92.6%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 36.0 3.86e-01 91.6% 76.2%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 26.0 3.31e-01 84.3% 80.7%
3hn3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 29.0 3.84e-01 85.3% 100.0%
7altB01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 34.0 3.73e-01 96.3% 79.1%
1b78A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.52 36.0 3.72e-01 100.0% 73.9%
1lq9A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 29.0 3.65e-01 75.4% 92.9%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4247994 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.73 40.0 5.36e-01 89.0% 100.0%
5079559 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 42.0 5.32e-01 91.6% 99.1%
3256920 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 36.0 4.40e-01 70.2% 79.2%
3858981 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.66 21.0 3.50e-01 72.3% 77.1%
3941539 1.1.13.40 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail 0.63 36.0 4.74e-01 89.0% 100.0%
2832216 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.59 45.0 4.92e-01 96.3% 98.0%
3446425 11.1.1.558 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF6598 0.56 28.0 3.50e-01 89.0% 75.0%
5067380 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.54 38.0 4.40e-01 81.2% 98.6%
3396863 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.53 26.0 3.34e-01 75.4% 79.1%
3458655 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 26.0 3.37e-01 89.5% 81.5%
4323146 7504.1.1.1 a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like 0.52 36.0 3.66e-01 97.9% 70.5%
3283564 881.1.1.26 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF7373 0.51 34.0 3.40e-01 93.2% 63.5%
3589225 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.51 34.0 4.00e-01 96.9% 96.3%
4937818 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 28.0 3.23e-01 97.9% 71.4%
D2 medium residues 193-261_346-369
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8itfR01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.63 49.0 3.45e-01 81.7% 31.4%
7ymiD01 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.58 45.0 3.65e-01 83.9% 76.1%
7d1tA01 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.57 45.0 3.61e-01 83.9% 74.2%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.56 48.0 4.08e-01 90.3% 75.9%
4kzpB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 47.0 3.38e-01 92.5% 66.4%
5bu6A00 3.20.20.370 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase 0.53 40.0 2.91e-01 80.6% 34.5%
3tp3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 40.0 3.36e-01 80.6% 70.9%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3504474 192.5.1.1 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 0.67 46.0 4.56e-01 71.0% 78.0%
3761098 4070.1.1.0 alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.59 52.0 4.20e-01 96.8% 66.3%
3948731 192.10.1.1 alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain › DksA_N 0.59 50.0 4.57e-01 91.4% 95.0%
3179258 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 46.0 3.44e-01 88.2% 74.8%
3961295 206.1.1.12 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › SelO 0.56 46.0 3.53e-01 93.5% 57.4%
4557378 192.10.1.0 alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain 0.53 42.0 4.08e-01 84.9% 83.8%
D3 medium residues 262-345
PDB
Domain cluster: representative
D4 medium residues 370-419_490-528_540-563_581-615
PDB
D5 medium residues 700-798
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01464.26 best SLT 40.7 2.20e-10 87.9% 61.5%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4yibA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.92 69.0 5.76e-01 93.9% 48.7%
3bkhA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.88 77.0 6.09e-01 96.0% 49.5%
4c5fA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.87 70.0 5.67e-01 92.9% 48.8%
1qsaA03 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.87 73.0 5.92e-01 100.0% 50.3%
4hjzA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.83 73.0 5.77e-01 100.0% 49.7%
7k5cB01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.81 59.0 4.92e-01 86.9% 46.5%
1xsfA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.75 49.0 4.77e-01 84.8% 61.1%
3fi7A01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.74 51.0 4.61e-01 98.0% 53.8%
1hfxA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.65 57.0 5.29e-01 96.0% 76.4%
2oqoA00 1.10.3810.10 Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like 0.52 40.0 3.28e-01 82.8% 49.7%
2oifB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 40.0 3.53e-01 87.9% 82.1%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3941811 235.1.1.32 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT, PF27553 0.89 72.0 5.89e-01 98.0% 49.4%
1175858 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.88 77.0 6.02e-01 96.0% 47.6%
3166094 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.85 73.0 5.89e-01 99.0% 50.9%
4515466 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.85 73.0 5.82e-01 99.0% 49.4%
4258903 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.85 75.0 6.11e-01 99.0% 55.2%
3971115 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.85 68.0 5.54e-01 100.0% 48.8%
4530587 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.83 74.0 5.82e-01 100.0% 49.7%
3944103 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.83 67.0 5.33e-01 100.0% 46.1%
2393514 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.83 72.0 5.66e-01 100.0% 47.9%
3947473 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.83 64.0 5.41e-01 88.9% 52.7%
3985073 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.81 63.0 5.56e-01 88.9% 58.5%
5028353 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.81 75.0 6.05e-01 100.0% 59.4%
3964630 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.80 68.0 5.63e-01 100.0% 54.3%
3945171 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.79 65.0 5.61e-01 100.0% 59.3%
4455133 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.78 59.0 6.27e-01 100.0% 88.6%
3381140 235.1.1.0 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.77 69.0 5.55e-01 96.0% 62.2%
185214 235.1.1.14 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transglycosylas 0.76 49.0 5.24e-01 86.9% 73.9%
3731869 235.1.1.0 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.76 69.0 5.51e-01 100.0% 69.2%
3657952 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.76 69.0 5.32e-01 96.0% 52.5%
4431057 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.76 66.0 5.73e-01 93.9% 62.8%
3587750 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.75 62.0 6.13e-01 93.9% 81.9%
3970721 235.1.1.0 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.75 70.0 5.69e-01 100.0% 58.3%
4010532 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.75 62.0 5.60e-01 88.9% 66.2%
3202405 235.1.1.0 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.75 69.0 5.54e-01 100.0% 67.6%
3838879 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.74 65.0 5.62e-01 100.0% 62.4%
3222819 235.1.1.12 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Destabilase 0.72 53.0 4.80e-01 80.8% 58.9%
3720940 235.1.1.0 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.68 62.0 4.97e-01 100.0% 54.3%
3205219 235.1.1.0 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.67 60.0 4.88e-01 100.0% 55.3%
3692876 235.1.1.0 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.66 62.0 4.95e-01 100.0% 61.1%
3393030 5050.1.1.1 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.58 44.0 3.37e-01 79.8% 71.7%
3513146 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.50 35.0 2.78e-01 72.7% 68.4%
D6 medium residues 799-902
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ka7A02 3.90.660.50 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › 0.60 43.0 3.46e-01 74.0% 51.0%
8eefB01 1.10.405.10 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 0.59 41.0 3.91e-01 72.1% 84.9%
8b70A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.53 44.0 2.98e-01 93.3% 78.0%
3fhgA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.51 40.0 3.91e-01 83.7% 85.0%
6nmnA02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.51 36.0 3.44e-01 75.0% 83.6%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2832670 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.58 41.0 3.06e-01 73.1% 33.7%
2389420 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 40.0 2.98e-01 78.8% 50.4%
5032452 5079.1.1.1 alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE 0.53 42.0 3.54e-01 87.5% 89.2%
3874582 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.52 36.0 3.87e-01 72.1% 94.1%
4438075 141.1.1.3 alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA 0.51 40.0 2.98e-01 86.5% 77.1%
4381351 3290.1.1.1 alpha complex topology › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › FeoB_Cyto 0.50 39.0 3.96e-01 82.7% 95.0%
3816825 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.50 35.0 3.67e-01 71.2% 98.9%