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FFC_09252017_16_scaffold_2_prodigal-single.1__X__X__00202
Bact-VirFFC_09252017_16_scaffold_2_prodigal-single.1__X__X__00202
Identity
- Kingdom:
- phage
Quality
51.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-157
Domain cluster:
rep: scnpilot_solids2_trim150_scaffold_133_prodigal-single.1__X__X__00046__D2-153
D2
high
residues 201-306
Domain cluster:
rep: KJ803031.1__AID16847.1__vBDshPR2C_32__00032__D58-159
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6xgqb01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.64 | 53.0 | 5.60e-01 | 92.5% | 98.9% |
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.64 | 50.0 | 5.28e-01 | 92.5% | 93.7% |
| 8eq1A01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.53 | 35.0 | 3.80e-01 | 91.5% | 81.8% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4930420 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.81 | 42.0 | 5.17e-01 | 89.6% | 78.6% |
| 2559744 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.80 | 44.0 | 5.80e-01 | 79.2% | 98.3% |
| 5083719 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.74 | 69.0 | 6.51e-01 | 100.0% | 98.4% |
| 4937267 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.71 | 65.0 | 6.28e-01 | 99.1% | 98.3% |
| 2640772 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.64 | 54.0 | 5.59e-01 | 95.3% | 95.0% |
| 2808420 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.63 | 50.0 | 4.97e-01 | 92.5% | 81.7% |
| 3969204 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 29.0 | 3.29e-01 | 89.6% | 65.3% |
| 4890345 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.55 | 35.0 | 3.85e-01 | 82.1% | 78.8% |
| 5076995 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.53 | 32.0 | 3.61e-01 | 79.2% | 80.0% |
| 4350337 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.51 | 30.0 | 3.45e-01 | 77.4% | 80.0% |
| 3263053 | 1.1.9.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 | 0.51 | 29.0 | 3.45e-01 | 90.6% | 84.3% |
D3
medium
residues 425-441_454-498
D4
medium
residues 578-694