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FFC_09252017_16_scaffold_2_prodigal-single.1__X__X__00297

Bact-Vir

FFC_09252017_16_scaffold_2_prodigal-single.1__X__X__00297

Identity

Kingdom:
phage

Quality

85.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-110
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1of5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 55.0 4.78e-01 99.0% 89.0%
3rgaA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 51.0 4.60e-01 88.7% 88.7%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 51.0 4.58e-01 87.6% 93.1%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 37.0 4.56e-01 74.2% 93.7%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 56.0 3.56e-01 100.0% 49.3%
2kxgA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 49.0 4.96e-01 88.7% 86.3%
2ebmA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.61 40.0 3.69e-01 85.6% 50.0%
7bwcA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 56.0 3.85e-01 100.0% 40.6%
8gn6A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.61 55.0 3.76e-01 100.0% 48.5%
3hk4A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 47.0 4.44e-01 83.5% 88.1%
2b1xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 49.0 4.14e-01 88.7% 86.8%
3a76A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 49.0 4.40e-01 89.7% 87.8%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.60 44.0 3.88e-01 88.7% 51.4%
2k54A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 53.0 4.87e-01 95.9% 92.7%
3mg1B02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 52.0 4.77e-01 94.8% 98.4%
2kf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 41.0 3.44e-01 84.5% 40.7%
1c7hA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 49.0 4.57e-01 89.7% 87.8%
4d47A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 54.0 3.53e-01 100.0% 35.3%
4o3vA00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.59 49.0 4.37e-01 89.7% 91.3%
3kspA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 49.0 4.49e-01 90.7% 91.5%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 48.0 4.47e-01 86.6% 95.8%
3hzpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 53.0 4.83e-01 99.0% 95.3%
4h3uA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 48.0 4.40e-01 89.7% 89.2%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 48.0 4.33e-01 88.7% 84.2%
7c5yA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 46.0 3.95e-01 83.5% 97.4%
1vqqA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.58 47.0 4.52e-01 86.6% 96.3%
3grdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 47.0 4.29e-01 88.7% 89.4%
1tp6A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 48.0 4.41e-01 89.7% 97.6%
1s5aB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 46.0 4.11e-01 87.6% 83.2%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 49.0 4.54e-01 92.8% 97.5%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 45.0 3.71e-01 83.5% 61.4%
2bngC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 48.0 4.34e-01 94.8% 91.4%
3dm8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 47.0 4.24e-01 89.7% 93.3%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 50.0 4.82e-01 96.9% 95.4%
3ec9A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 46.0 4.21e-01 88.7% 89.9%
3fgyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 46.0 4.17e-01 88.7% 85.2%
2h2yA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.57 38.0 3.63e-01 86.6% 57.8%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 46.0 4.02e-01 88.7% 89.2%
3g8zA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 45.0 4.14e-01 88.7% 88.3%
3ef8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 48.0 4.21e-01 96.9% 89.9%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 37.0 4.11e-01 73.2% 91.9%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 47.0 4.51e-01 96.9% 82.5%
2r55A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 42.0 3.35e-01 92.8% 40.9%
1jssA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 41.0 3.31e-01 92.8% 41.2%
3gkeA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.53 43.0 3.44e-01 91.8% 42.4%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 36.0 3.78e-01 72.2% 83.5%
3rd6A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 36.0 3.20e-01 87.6% 47.9%
2uvaG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 39.0 3.55e-01 81.4% 84.6%
1em2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 41.0 3.26e-01 91.8% 39.7%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 39.0 3.20e-01 80.4% 91.1%
8aasC01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 34.0 3.44e-01 70.1% 89.2%
2yh6D00 3.30.530.50 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.51 38.0 3.72e-01 82.5% 71.8%
2xsgB01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 43.0 3.09e-01 92.8% 69.8%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.50 39.0 3.46e-01 84.5% 84.8%
4gnxC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 35.0 2.86e-01 71.1% 91.3%
1sr4B00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.50 41.0 3.05e-01 89.7% 44.2%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4436313 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.69 47.0 4.91e-01 78.4% 75.6%
4561192 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.66 48.0 5.15e-01 86.6% 92.5%
3808162 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.65 47.0 4.89e-01 86.6% 82.2%
4623792 243.1.1.34 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › YchJ_M-like 0.64 49.0 4.54e-01 81.4% 96.8%
None 0.64 49.0 2.88e-01 84.5% 10.3%
3744012 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.64 57.0 3.88e-01 100.0% 33.9%
4002697 5090.2.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Immune inhibitor A metallopeptidase C-terminal domain › Immune inhibitor A metallopeptidase C-terminal domain 0.63 55.0 4.57e-01 95.9% 98.8%
5040972 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.62 43.0 4.80e-01 84.5% 93.3%
3801133 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.62 51.0 4.63e-01 87.6% 88.3%
3710733 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.62 50.0 4.67e-01 87.6% 94.2%
139531 243.3.1.12 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI 0.61 49.0 4.96e-01 88.7% 86.3%
5034706 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.61 42.0 4.60e-01 84.5% 90.7%
3453643 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.61 50.0 4.39e-01 88.7% 81.4%
4074364 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.61 52.0 4.71e-01 92.8% 83.1%
4254174 4099.1.1.22 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-P 0.61 41.0 3.57e-01 73.2% 45.5%
3777947 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.61 55.0 3.47e-01 100.0% 25.7%
4193401 243.1.1.34 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › YchJ_M-like 0.61 50.0 4.81e-01 88.7% 94.5%
3826602 243.1.1.25 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.61 49.0 4.40e-01 88.7% 86.4%
3716884 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.61 54.0 3.50e-01 100.0% 43.3%
3307679 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.60 49.0 4.40e-01 89.7% 83.6%
6411 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.60 53.0 4.87e-01 95.9% 92.7%
3834402 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.60 53.0 3.73e-01 100.0% 34.0%
3430924 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 50.0 4.27e-01 92.8% 76.2%
3674547 243.1.1.25 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.59 50.0 4.36e-01 92.8% 81.3%
3517998 243.1.1.40 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NXF_NTF2 0.59 52.0 4.16e-01 99.0% 86.0%
3725005 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.59 48.0 4.35e-01 89.7% 87.4%
3721524 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 50.0 4.52e-01 96.9% 90.0%
3445416 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 52.0 3.55e-01 100.0% 43.9%
3214793 5.1.4.166 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_DCAF4 0.58 52.0 3.45e-01 100.0% 39.0%
3650990 274.1.1.44 a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7804 0.58 41.0 3.79e-01 74.2% 91.5%
3413325 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 52.0 3.48e-01 100.0% 38.7%
3650660 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.58 40.0 3.64e-01 82.5% 52.2%
4511768 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.58 53.0 3.62e-01 100.0% 30.8%
3365246 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.58 42.0 3.47e-01 75.3% 70.6%
3828738 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.58 50.0 4.32e-01 96.9% 84.5%
3586301 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.58 45.0 3.49e-01 92.8% 37.3%
3789364 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 51.0 3.43e-01 100.0% 44.9%
3578918 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.57 40.0 3.64e-01 97.9% 52.6%
1807441 243.1.1.37 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TcpC-like_C 0.57 50.0 4.82e-01 96.9% 95.4%
4039533 3321.1.1.1 a+b two layers › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › FAS_meander 0.57 44.0 3.76e-01 83.5% 70.6%
2765234 243.3.1.12 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI 0.56 47.0 4.77e-01 92.8% 94.8%
3813872 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.55 49.0 3.52e-01 100.0% 35.0%
3170704 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 49.0 3.27e-01 100.0% 35.1%
3583345 5.1.4.288 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APEH_N 0.55 50.0 3.22e-01 100.0% 27.7%
3234900 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.55 43.0 3.24e-01 92.8% 34.5%
3932167 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 43.0 2.96e-01 84.5% 47.8%
3433417 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.55 49.0 4.83e-01 100.0% 94.3%
3959925 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.55 43.0 4.28e-01 96.9% 82.0%
3270992 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.54 44.0 3.91e-01 87.6% 65.7%
4447999 3222.1.1.1 a+b complex topology › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › AceK_regulatory 0.54 47.0 3.31e-01 100.0% 41.5%
4204257 243.1.1.7 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N 0.53 42.0 3.88e-01 87.6% 87.2%
4160858 241.1.1.2 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.53 41.0 3.60e-01 82.5% 81.9%
3811535 331.3.1.28 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF220 0.53 41.0 3.82e-01 87.6% 65.6%
3962319 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.52 40.0 3.57e-01 88.7% 55.3%
3812932 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.52 42.0 3.50e-01 87.6% 50.6%
3538024 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.52 46.0 3.21e-01 100.0% 32.3%
5039064 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 45.0 3.07e-01 100.0% 29.6%
5010189 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.51 41.0 3.67e-01 87.6% 67.6%
5055744 5.1.3.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylsulfotran_2 0.51 45.0 3.10e-01 100.0% 47.0%
3856375 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.51 40.0 3.17e-01 87.6% 50.9%
3403847 9.1.1.47 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Chitin_bind_4 0.51 36.0 3.75e-01 77.3% 81.1%
4666593 241.1.1.2 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.51 44.0 3.82e-01 100.0% 82.4%
5055280 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.50 38.0 3.38e-01 86.6% 54.5%