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FFC_09252017_16_scaffold_2_prodigal-single.1__X__X__00325

Bact-Vir

FFC_09252017_16_scaffold_2_prodigal-single.1__X__X__00325

Identity

Kingdom:
phage

Quality

74.3 mean pLDDT

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-105
PDB
Domain cluster: rep: rifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00033__D3-92
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4d8pB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.69 33.0 3.31e-01 70.6% 44.1%
6oziB00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.66 55.0 4.11e-01 89.2% 85.9%
4o8uA00 3.30.420.440 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF4152 0.63 55.0 4.21e-01 94.1% 86.8%
4h0pA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 42.0 3.41e-01 91.2% 36.8%
2qh9A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.60 48.0 3.97e-01 86.3% 95.5%
3r9pB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 39.0 3.21e-01 78.4% 40.1%
1yqzA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.56 40.0 3.97e-01 88.2% 70.4%
1vqzA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.56 38.0 4.07e-01 92.2% 80.7%
3r07C00 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.55 38.0 4.04e-01 89.2% 81.8%
1ocsA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 42.0 3.90e-01 83.3% 98.5%
2cduA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.54 41.0 3.98e-01 91.2% 71.7%
3a7rA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.54 39.0 4.18e-01 91.2% 87.6%
4fx9A03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.53 39.0 3.84e-01 91.2% 69.9%
3i8bA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 40.0 2.87e-01 79.4% 97.2%
1cc1L00 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.53 45.0 2.89e-01 92.2% 99.6%
1nhpA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.53 40.0 3.88e-01 91.2% 72.6%
6a6yA00 2.60.40.1490 Mainly Beta › Sandwich › Immunoglobulin-like › Histone chaperone ASF1-like 0.52 36.0 3.15e-01 70.6% 71.7%
1nbwA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 46.0 4.22e-01 96.1% 87.9%
6pfzD02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 39.0 2.92e-01 91.2% 31.9%
2joeA01 3.30.1830.10 Alpha Beta › 2-Layer Sandwich › YehR-like fold › YehR-like 0.51 40.0 3.75e-01 84.3% 95.3%
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 38.0 3.18e-01 100.0% 43.5%
1kpsC00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.51 42.0 3.67e-01 99.0% 59.6%
3cgbA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.50 38.0 3.72e-01 91.2% 73.6%
4qn0B00 3.40.570.10 Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A 0.50 39.0 3.04e-01 84.3% 74.1%
4a2bA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 42.0 3.80e-01 91.2% 91.3%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3390600 244.3.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.68 46.0 5.25e-01 89.2% 94.7%
1870610 2484.7.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Uncharacterized protein PF2046 › Uncharacterized protein PF2046 › DUF4152 0.63 54.0 4.17e-01 94.1% 85.7%
4969580 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.62 52.0 3.94e-01 87.3% 87.3%
4938778 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.62 52.0 3.95e-01 89.2% 84.4%
4098000 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.60 50.0 4.75e-01 90.2% 90.0%
5031294 2484.1.1.22 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.59 48.0 3.91e-01 86.3% 97.3%
5048020 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 53.0 3.69e-01 100.0% 67.0%
2887749 2484.1.1.219 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF29688 0.58 51.0 3.97e-01 100.0% 72.3%
5062798 244.3.1.3 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C 0.58 43.0 4.11e-01 91.2% 66.7%
3590972 2484.1.1.24 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 42.0 3.67e-01 75.5% 95.2%
4636438 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.57 45.0 4.30e-01 85.3% 95.0%
4981069 2484.2.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain 0.57 35.0 4.25e-01 96.1% 96.9%
4397552 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.56 46.0 4.37e-01 90.2% 94.4%
4439294 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.56 46.0 4.35e-01 90.2% 99.2%
4438376 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.56 46.0 4.40e-01 90.2% 93.3%
4076432 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.56 46.0 4.35e-01 90.2% 96.0%
4219295 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.56 46.0 4.28e-01 91.2% 91.5%
4115185 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.56 46.0 4.25e-01 90.2% 90.8%
4010765 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.56 46.0 4.30e-01 90.2% 96.8%
4680971 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.55 46.0 4.35e-01 91.2% 93.6%
4218926 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.55 45.0 4.29e-01 88.2% 96.7%
4954572 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.55 45.0 4.31e-01 89.2% 97.5%
3488379 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.55 43.0 4.02e-01 89.2% 66.2%
5052265 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.55 45.0 4.28e-01 91.2% 93.6%
4058525 4142.1.1.1 ↗ a+b two layers › YehR-like › YehR-like › YehR-like › DUF1307 0.54 43.0 4.01e-01 85.3% 96.8%
3739406 330.1.1.9 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dcr1-like_dsRNA-bd_dom 0.54 38.0 3.76e-01 72.5% 81.9%
3593454 244.3.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.53 42.0 3.52e-01 85.3% 93.7%
5046724 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.52 42.0 4.07e-01 87.3% 98.3%
3316523 2484.1.1.36 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 0.52 44.0 3.37e-01 95.1% 74.3%
5042489 244.3.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › Lip_prot_lig_C 0.51 38.0 3.99e-01 91.2% 85.1%
4977352 244.3.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › Lip_prot_lig_C 0.51 39.0 3.97e-01 91.2% 79.6%
5029382 244.3.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › Lip_prot_lig_C 0.51 38.0 3.99e-01 92.2% 87.8%
3626902 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.51 42.0 3.82e-01 90.2% 66.7%
4988122 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 33.0 3.52e-01 86.3% 75.6%
4961682 244.3.1.3 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C 0.51 42.0 4.08e-01 91.2% 90.4%
4323378 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.50 43.0 3.15e-01 95.1% 75.9%
3189946 10.1.1.13 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_7 0.50 40.0 2.94e-01 90.2% 64.2%