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FFC_09252017_16_scaffold_2_prodigal-single.1__X__X__00342
Bact-VirFFC_09252017_16_scaffold_2_prodigal-single.1__X__X__00342
Identity
- Kingdom:
- phage
Quality
86.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-99
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 40.0 | 4.19e-01 | 85.4% | 69.0% |
| 2f2cA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.61 | 41.0 | 4.01e-01 | 100.0% | 62.3% |
| 7dfeA01 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.58 | 39.0 | 3.60e-01 | 85.4% | 51.2% |
| 1rp3A01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.56 | 42.0 | 4.47e-01 | 96.9% | 91.8% |
| 3e2dA03 | 1.10.1200.140 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Alkaline phosphatase, crown domain | 0.55 | 35.0 | 4.13e-01 | 80.2% | 100.0% |
| 2b0hA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.53 | 38.0 | 3.46e-01 | 75.0% | 90.6% |
| 1gcvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 42.0 | 3.72e-01 | 86.5% | 83.6% |
| 6hj2A00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.52 | 47.0 | 3.37e-01 | 99.0% | 98.2% |
| 3otnA00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 44.0 | 2.85e-01 | 94.8% | 46.1% |
| 1twfB04 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.51 | 41.0 | 3.36e-01 | 86.5% | 80.2% |
| 2d2mD00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 39.0 | 3.46e-01 | 83.3% | 91.0% |
| 3ni7A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 39.0 | 3.27e-01 | 97.9% | 46.6% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3189160 | 101.1.2.527 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_RGF3 | 0.61 | 47.0 | 4.57e-01 | 92.7% | 73.3% |
| 3593619 | 603.1.1.17 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE | 0.57 | 32.0 | 2.48e-01 | 72.9% | 21.7% |
| 3284524 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.55 | 44.0 | 4.19e-01 | 88.5% | 76.5% |
| 4935538 | 7583.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in AF1104-like proteins › Rossmann-like domain in AF1104-like proteins › Rossmann-like domain in AF1104-like proteins › ARMT1-like_dom | 0.53 | 38.0 | 2.99e-01 | 99.0% | 33.2% |
| 3215867 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.52 | 36.0 | 2.95e-01 | 74.0% | 82.2% |
D2
high
residues 111-187
Domain cluster:
rep: JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00308__D191-235