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FFC_09252017_16_scaffold_4_prodigal-single.1__X__X__00016
Bact-VirFFC_09252017_16_scaffold_4_prodigal-single.1__X__X__00016
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-219
Domain cluster:
rep: pig_ID_3158_F95_scaffold_0_curated_closed_complete_prodigal-single.1__X__X__00166__D3-183
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03690.19 best | MYG1_exonuc | 114.9 | 8.10e-33 | 99.5% | 61.6% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5jazA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.67 | 29.0 | 4.39e-01 | 71.1% | 93.4% |
| 3tmgB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 37.0 | 4.21e-01 | 94.8% | 91.0% |
| 3t38A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 30.0 | 3.71e-01 | 90.5% | 90.6% |
| 1jl3A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 31.0 | 3.80e-01 | 91.9% | 92.7% |
| 2ozzA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 30.0 | 3.62e-01 | 88.2% | 87.8% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4122163 | 2006.1.2.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › UPF0160 | 0.91 | 69.0 | 7.82e-01 | 95.3% | 97.6% |
| 3601004 | 2006.1.2.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases | 0.88 | 69.0 | 7.04e-01 | 94.3% | 82.0% |
| 3706935 | 2006.1.2.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › UPF0160 | 0.86 | 76.0 | 7.55e-01 | 95.7% | 88.4% |
| 3480438 | 2006.1.2.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases | 0.85 | 76.0 | 7.95e-01 | 95.3% | 99.5% |
| 3725387 | 2006.1.2.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › UPF0160 | 0.81 | 74.0 | 7.58e-01 | 94.3% | 100.0% |
| 3577563 | 2006.1.2.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › UPF0160 | 0.78 | 56.0 | 6.41e-01 | 90.0% | 95.1% |
| 5011585 | 2006.1.2.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases | 0.59 | 48.0 | 5.07e-01 | 91.9% | 92.6% |
| 3707757 | 148.1.3.28 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_11 | 0.57 | 28.0 | 3.56e-01 | 86.3% | 77.6% |
| 3610875 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.56 | 29.0 | 3.55e-01 | 87.7% | 78.4% |
| 3737956 | 601.19.1.18 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Mmc1_C | 0.53 | 41.0 | 4.34e-01 | 91.0% | 86.7% |
| 3999676 | 188.1.1.0 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain | 0.53 | 32.0 | 3.44e-01 | 85.3% | 66.5% |
| 2387840 | 5060.2.1.2 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Spore_III_AB | 0.51 | 30.0 | 3.83e-01 | 87.7% | 96.9% |
D2
high
residues 227-315
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03690.19 best | MYG1_exonuc | 53.4 | 4.20e-14 | 100.0% | 31.8% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kwaA00 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.59 | 45.0 | 4.36e-01 | 83.1% | 90.1% |
| 6mtzA01 | 3.10.310.30 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.57 | 51.0 | 4.82e-01 | 100.0% | 83.2% |
| 4v1al00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.56 | 43.0 | 3.80e-01 | 83.1% | 79.7% |
| 6xzqA01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.56 | 35.0 | 2.92e-01 | 93.3% | 34.0% |
| 4m6rA00 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.53 | 45.0 | 3.50e-01 | 100.0% | 81.2% |
| 3va7A05 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.53 | 45.0 | 4.39e-01 | 96.6% | 92.0% |
| 2v4jB01 | 3.30.70.3340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 41.0 | 3.61e-01 | 94.4% | 56.1% |
| 2opiA00 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.52 | 44.0 | 3.53e-01 | 100.0% | 82.2% |
| 3tu3A00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.52 | 44.0 | 4.05e-01 | 95.5% | 84.0% |
| 2plgA01 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.52 | 46.0 | 4.05e-01 | 100.0% | 81.1% |
| 3mvgA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.51 | 39.0 | 3.31e-01 | 84.3% | 94.5% |
| 2gk6A02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.51 | 37.0 | 3.83e-01 | 77.5% | 91.6% |
| 3o7bA00 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.51 | 44.0 | 3.32e-01 | 96.6% | 63.4% |
| 3hj6A02 | 3.40.1620.20 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.50 | 32.0 | 3.74e-01 | 88.8% | 98.3% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3480439 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.93 | 89.0 | 7.35e-01 | 100.0% | 77.9% |
| 3937442 | 5104.1.1.4 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › UPF0160 | 0.93 | 89.0 | 7.52e-01 | 100.0% | 78.5% |
| 4026396 | 5104.1.1.4 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › UPF0160 | 0.93 | 89.0 | 7.49e-01 | 100.0% | 74.8% |
| 4257915 | 5104.1.1.4 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › UPF0160 | 0.93 | 89.0 | 7.50e-01 | 100.0% | 72.6% |
| 3636114 | 5104.1.1.4 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › UPF0160 | 0.93 | 89.0 | 7.19e-01 | 100.0% | 78.7% |
| 3494276 | 5104.1.1.4 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › UPF0160 | 0.92 | 88.0 | 7.68e-01 | 100.0% | 74.4% |
| 3597460 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.90 | 86.0 | 7.40e-01 | 100.0% | 76.9% |
| 5030203 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.66 | 60.0 | 5.26e-01 | 100.0% | 76.9% |
| 3927599 | 2007.1.13.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase | 0.65 | 46.0 | 3.89e-01 | 100.0% | 44.8% |
| 2570277 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.61 | 54.0 | 4.78e-01 | 100.0% | 71.8% |
| 3588817 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.60 | 52.0 | 4.78e-01 | 100.0% | 72.5% |
| 4994876 | 306.6.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › CT_C_D | 0.60 | 44.0 | 4.50e-01 | 77.5% | 91.8% |
| 4962920 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.59 | 53.0 | 4.55e-01 | 100.0% | 67.1% |
| 4929115 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.59 | 51.0 | 4.75e-01 | 100.0% | 76.5% |
| 5078791 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.58 | 51.0 | 4.64e-01 | 100.0% | 79.2% |
| 3602529 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.58 | 47.0 | 4.47e-01 | 100.0% | 73.6% |
| 3839890 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.58 | 51.0 | 3.50e-01 | 100.0% | 27.4% |
| 3388234 | 2006.1.2.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases | 0.58 | 51.0 | 3.50e-01 | 100.0% | 28.4% |
| 4931792 | 306.3.1.6 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › DEAD_assoc | 0.58 | 45.0 | 3.50e-01 | 98.9% | 38.5% |
| 5079182 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.57 | 50.0 | 4.54e-01 | 100.0% | 76.4% |
| 3247951 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.56 | 49.0 | 4.36e-01 | 100.0% | 76.2% |
| 4941208 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.56 | 43.0 | 4.25e-01 | 89.9% | 78.9% |
| 4607010 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.56 | 48.0 | 4.45e-01 | 100.0% | 73.9% |
| 5000793 | 2488.1.1.7 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › EMG1 | 0.56 | 50.0 | 3.74e-01 | 100.0% | 64.0% |
| 4270923 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.55 | 46.0 | 3.29e-01 | 93.3% | 66.4% |
| 4442677 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.55 | 47.0 | 4.37e-01 | 100.0% | 78.3% |
| 4988159 | 304.37.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 › NIR_SIR_ferr | 0.54 | 42.0 | 3.86e-01 | 94.4% | 63.5% |
| 3381077 | 2488.1.1.7 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › EMG1 | 0.54 | 49.0 | 4.17e-01 | 100.0% | 92.9% |
| 4079590 | 306.6.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › CT_C_D | 0.53 | 45.0 | 4.38e-01 | 95.5% | 92.0% |
| 3688090 | 306.6.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › CT_C_D | 0.53 | 46.0 | 4.61e-01 | 100.0% | 95.6% |
| 4611643 | 281.1.1.1 ↗ | a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › Aldolase_II | 0.52 | 45.0 | 3.47e-01 | 100.0% | 79.1% |
| 5044975 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 45.0 | 3.70e-01 | 100.0% | 94.9% |
| 3283785 | 306.6.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › CT_C_D | 0.51 | 44.0 | 4.42e-01 | 97.8% | 97.8% |
| 5071396 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.51 | 42.0 | 4.05e-01 | 97.8% | 80.0% |
| 3397985 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.51 | 42.0 | 3.73e-01 | 100.0% | 62.3% |
| 3179678 | 7502.1.1.7 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon2 | 0.50 | 46.0 | 4.14e-01 | 100.0% | 90.8% |