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FFC_09252017_16_scaffold_4_prodigal-single.1__X__X__00089

Bact-Vir

FFC_09252017_16_scaffold_4_prodigal-single.1__X__X__00089

Identity

Kingdom:
phage

Quality

90.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-70
PDB
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.73 44.0 5.15e-01 80.6% 90.9%
3ga8A00 3.10.20.860 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.67 57.0 5.72e-01 92.5% 100.0%
3c19A02 3.10.20.300 Alpha Beta › Roll › Ubiquitin-like (UB roll) › mk0293 like domain 0.66 44.0 4.21e-01 79.1% 59.0%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.63 39.0 3.90e-01 85.1% 59.2%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.63 44.0 3.64e-01 73.1% 45.7%
3q34A00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.62 46.0 3.47e-01 89.6% 31.0%
3aonA00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 56.0 3.99e-01 98.5% 42.0%
3j7aV00 2.40.50.1000 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 43.0 3.42e-01 74.6% 56.8%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.62 40.0 4.11e-01 79.1% 68.8%
3akoC00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.61 40.0 3.11e-01 79.1% 29.5%
3oc4B03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.60 42.0 3.54e-01 92.5% 41.3%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.60 39.0 3.96e-01 79.1% 67.7%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.60 39.0 4.11e-01 77.6% 75.4%
1nltA01 2.60.260.20 Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain 0.60 38.0 3.58e-01 73.1% 53.8%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.60 43.0 2.98e-01 97.0% 21.1%
1nf3C00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.60 43.0 3.57e-01 77.6% 55.3%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 3.88e-01 91.0% 74.8%
3g8zA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 40.0 3.30e-01 91.0% 36.7%
3ga2A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.59 45.0 3.20e-01 86.6% 86.9%
6pfzD02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 43.0 2.92e-01 91.0% 20.6%
3vskA03 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.58 39.0 2.49e-01 70.1% 43.3%
3icsA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 42.0 2.88e-01 91.0% 20.5%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 38.0 3.75e-01 83.6% 63.4%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.57 39.0 3.31e-01 82.1% 41.0%
3ro6C01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 42.0 3.68e-01 80.6% 82.1%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.57 37.0 3.54e-01 94.0% 51.7%
6jmgB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 42.0 3.09e-01 94.0% 30.1%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.57 38.0 2.78e-01 70.1% 52.6%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 39.0 3.49e-01 74.6% 70.9%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.55 44.0 4.23e-01 85.1% 78.7%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 43.0 3.49e-01 83.6% 63.5%
2cduA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.55 40.0 3.49e-01 92.5% 47.8%
1buqA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 44.0 3.69e-01 92.5% 72.8%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 38.0 3.14e-01 73.1% 41.9%
4fx9A03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.55 39.0 3.42e-01 86.6% 46.9%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.54 48.0 3.28e-01 100.0% 55.6%
2y7bA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.26e-01 80.6% 93.3%
3n72A00 3.15.10.20 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Activator of Hsp90 ATPase Aha1, N-terminal domain 0.54 40.0 3.25e-01 82.1% 69.2%
3obqA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.54 45.0 3.58e-01 94.0% 72.3%
2g3aA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 36.0 3.19e-01 79.1% 44.8%
1nhpA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.54 39.0 3.40e-01 92.5% 47.8%
1vqqA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.53 39.0 3.37e-01 77.6% 79.8%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 43.0 2.87e-01 94.0% 90.9%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.40e-01 83.6% 92.1%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.52 42.0 2.88e-01 89.6% 36.6%
4j8tA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 3.31e-01 88.1% 76.6%
7xlqD01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 35.0 2.98e-01 74.6% 96.9%
2lxxA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 39.0 3.07e-01 85.1% 80.9%
3cgbA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.51 38.0 3.27e-01 80.6% 49.1%
7rd0A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 41.0 2.70e-01 92.5% 87.9%
8fwpB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 42.0 2.90e-01 92.5% 91.5%
7t4dA01 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.51 42.0 2.88e-01 100.0% 73.0%
1tuhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 41.0 3.39e-01 92.5% 96.2%
1a6aB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.50 35.0 3.32e-01 76.1% 86.5%
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.50 36.0 3.14e-01 77.6% 49.5%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4932428 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.72 46.0 4.56e-01 76.1% 61.4%
3592148 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.72 51.0 3.09e-01 100.0% 11.0%
5028346 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 57.0 5.91e-01 94.0% 100.0%
3452042 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.71 51.0 5.57e-01 83.6% 92.7%
5016315 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.70 53.0 4.36e-01 82.1% 92.0%
3232550 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 46.0 4.30e-01 76.1% 55.3%
4546371 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.68 51.0 4.18e-01 79.1% 91.7%
3942790 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.68 42.0 4.34e-01 73.1% 64.6%
5040847 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.68 44.0 2.90e-01 100.0% 15.3%
4226251 375.1.1.252 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF27302 0.67 47.0 4.96e-01 92.5% 83.3%
4957121 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 39.0 4.02e-01 80.6% 60.0%
3057477 220.1.1.146 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_NDK7_N 0.67 44.0 3.97e-01 74.6% 49.5%
3602976 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 39.0 4.20e-01 83.6% 69.1%
4541164 3926.1.1.1 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.66 52.0 3.63e-01 86.6% 35.0%
4951973 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 40.0 4.33e-01 80.6% 76.4%
4982831 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.64 47.0 2.80e-01 77.6% 12.0%
3250857 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 45.0 4.04e-01 73.1% 76.7%
3609014 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.64 38.0 2.65e-01 79.1% 17.4%
2325572 881.1.1.9 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Tli4_C 0.63 46.0 3.50e-01 100.0% 32.1%
3218749 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.63 41.0 4.30e-01 71.6% 73.3%
5056633 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.63 43.0 3.18e-01 73.1% 78.3%
4514946 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 45.0 3.20e-01 76.1% 70.8%
3174350 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 43.0 4.44e-01 77.6% 76.9%
4001211 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 39.0 3.78e-01 71.6% 55.1%
4771028 271.1.1.1 beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.62 40.0 4.15e-01 79.1% 69.8%
3701914 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 45.0 4.07e-01 91.0% 55.8%
3930311 220.1.1.176 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.61 39.0 3.24e-01 88.1% 35.8%
3728856 171.1.1.9 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3, Ribonucleas_3_3 0.61 41.0 2.90e-01 71.6% 83.1%
3315173 243.3.1.46 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SWIM 0.61 37.0 3.16e-01 74.6% 34.8%
3545826 7.1.1.1 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.60 43.0 3.65e-01 77.6% 56.7%
2490256 271.1.1.1 beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.60 39.0 3.95e-01 79.1% 66.7%
4971602 316.1.1.45 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF4269 0.59 42.0 3.28e-01 79.1% 33.8%
4972532 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.59 45.0 4.06e-01 82.1% 62.2%
5050213 192.2.1.87 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ATP-synt_D 0.58 51.0 3.72e-01 100.0% 40.0%
3902357 7.1.1.1 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.58 44.0 3.52e-01 82.1% 44.4%
3334359 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.57 43.0 3.18e-01 80.6% 92.2%
5045252 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.57 44.0 3.83e-01 82.1% 55.0%
4453085 7579.1.1.137 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › FrsA-like, Abhydrolase_6 0.57 42.0 2.63e-01 82.1% 48.6%
3724000 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.57 43.0 3.63e-01 98.5% 46.7%
4262943 220.1.1.184 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP 0.56 42.0 3.50e-01 82.1% 54.4%
5052861 211.1.1.7 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_4 0.56 45.0 3.62e-01 92.5% 42.9%
3193261 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.56 50.0 3.12e-01 100.0% 21.9%
3898198 220.1.1.184 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP 0.56 42.0 3.49e-01 82.1% 54.4%
4569355 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.56 42.0 2.57e-01 82.1% 33.7%
3565552 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 43.0 3.42e-01 80.6% 86.4%
3913149 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.56 45.0 3.58e-01 92.5% 70.0%
3892129 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.56 43.0 3.51e-01 88.1% 73.6%
4996610 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.55 38.0 3.53e-01 89.6% 53.3%
3579667 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.55 44.0 3.46e-01 85.1% 47.4%
4493573 4964.1.1.2 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.55 37.0 2.77e-01 71.6% 48.0%
3837975 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 41.0 3.11e-01 82.1% 38.8%
5018717 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 40.0 4.36e-01 77.6% 94.5%
3282593 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.54 48.0 3.29e-01 100.0% 59.2%
4995179 236.3.1.1 beta barrels › GroES-like › AF1531-like › AF1531-like › DUF655 0.53 36.0 3.40e-01 71.6% 55.3%
4966168 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 40.0 2.60e-01 85.1% 19.1%
4497101 4312.2.1.0 a+b two layers › RelE-like › YaeB-like › YaeB-like 0.52 40.0 3.74e-01 88.1% 93.3%
3645375 386.1.1.117 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.51 32.0 2.99e-01 70.1% 44.7%
4961941 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 43.0 2.75e-01 100.0% 58.0%
3915626 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 35.0 3.23e-01 74.6% 73.7%