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FFC_09252017_16_scaffold_6_prodigal-single.1__X__X__00119

Bact-Vir

FFC_09252017_16_scaffold_6_prodigal-single.1__X__X__00119

Identity

Kingdom:
phage

Quality

70.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 45-171
PDB
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ziuB01 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.68 61.0 5.83e-01 100.0% 90.6%
4bxoA01 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.67 58.0 5.69e-01 100.0% 89.6%
3k9gA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 61.0 5.02e-01 100.0% 99.6%
1d5cA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 60.0 5.56e-01 100.0% 98.8%
5xc5A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 60.0 5.48e-01 100.0% 96.4%
2fokA03 3.40.91.30 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.65 57.0 5.09e-01 94.5% 85.1%
1j24A00 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 57.0 5.69e-01 100.0% 93.2%
2csuA03 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.65 59.0 5.42e-01 100.0% 91.6%
1ryhA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 59.0 5.32e-01 100.0% 93.6%
3geeA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 58.0 5.70e-01 99.2% 93.2%
1egaA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 58.0 5.15e-01 100.0% 90.6%
2ejbA00 3.40.50.1950 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like 0.64 58.0 5.20e-01 100.0% 96.6%
2bgwB01 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 57.0 5.66e-01 99.2% 98.5%
7zs9401 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.61 54.0 4.49e-01 96.9% 100.0%
1u9yA01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 54.0 5.14e-01 96.9% 100.0%
3mcaA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 55.0 5.16e-01 99.2% 99.4%
4ja0D02 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 55.0 5.53e-01 100.0% 96.9%
3lrtB01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 54.0 5.10e-01 98.4% 99.4%
5mp7A01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 55.0 5.05e-01 100.0% 98.1%
4twbA01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 54.0 5.07e-01 97.6% 100.0%
2wj6A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 54.0 4.65e-01 100.0% 84.3%
4dghA00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.60 50.0 5.02e-01 89.0% 94.5%
1auqA00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.60 54.0 4.59e-01 100.0% 88.0%
2c4kA01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 54.0 4.92e-01 100.0% 95.8%
3mmlF01 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.59 30.0 3.66e-01 96.1% 75.9%
2bfwA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.59 54.0 4.72e-01 100.0% 75.1%
1atzB00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.58 53.0 4.65e-01 100.0% 97.9%
3ibtA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 52.0 4.56e-01 100.0% 90.2%
3qy9B01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 51.0 4.99e-01 100.0% 90.4%
2jjmA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.56 50.0 4.53e-01 100.0% 96.1%
3r0vA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 50.0 4.03e-01 100.0% 93.0%
4g0mA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 51.0 5.02e-01 100.0% 100.0%
3gdwB00 3.40.50.510 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component 0.56 45.0 4.45e-01 100.0% 80.4%
2r47A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 48.0 4.66e-01 93.7% 88.4%
3qq5A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 49.0 4.53e-01 100.0% 89.6%
4uhcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 49.0 3.85e-01 100.0% 87.4%
3h16B00 3.40.50.10140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain 0.55 49.0 4.83e-01 100.0% 97.8%
2lciA00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 46.0 4.54e-01 100.0% 88.8%
1npdB02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 45.0 4.27e-01 89.8% 87.2%
4lj3A00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.54 49.0 3.89e-01 100.0% 78.9%
3va7A05 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.53 30.0 3.37e-01 97.6% 69.0%
2phcB01 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.53 32.0 3.84e-01 73.2% 91.6%
2re1A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 30.0 3.74e-01 97.6% 94.6%
1jfuA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 41.0 3.75e-01 85.0% 85.2%
4pwuC00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 30.0 3.67e-01 97.6% 89.7%
2i3bA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 43.0 3.85e-01 92.9% 92.1%
2cpdA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 29.0 3.56e-01 94.5% 90.7%
5ze7A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 47.0 4.37e-01 100.0% 83.9%
3pgvA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.51 30.0 3.27e-01 93.7% 70.3%
4g4sP00 3.40.50.10900 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit 0.51 45.0 4.01e-01 100.0% 85.3%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3172340 2004.1.1.132 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DLIC 0.69 63.0 5.04e-01 100.0% 76.3%
4941784 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.67 56.0 5.51e-01 90.6% 97.0%
3480662 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.66 61.0 5.21e-01 100.0% 82.5%
3895426 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.66 61.0 5.10e-01 100.0% 76.6%
4948137 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.65 59.0 5.30e-01 100.0% 92.0%
4288654 2008.1.1.7 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.64 58.0 5.54e-01 100.0% 90.3%
3943058 2007.3.1.0 a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains 0.64 59.0 5.32e-01 100.0% 89.4%
3895050 2008.1.1.7 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.64 58.0 5.26e-01 100.0% 77.1%
5070528 2004.1.1.164 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc 0.63 57.0 5.05e-01 100.0% 91.4%
3914377 2004.1.1.118 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 0.63 56.0 5.00e-01 100.0% 88.6%
5066421 2008.1.1.7 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.63 56.0 5.22e-01 100.0% 78.8%
3717060 7573.1.1.2 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N 0.63 56.0 4.89e-01 99.2% 94.4%
4679461 2006.1.6.38 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF444 0.62 56.0 4.66e-01 100.0% 74.8%
4953911 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.62 51.0 5.29e-01 89.8% 98.3%
4012972 7573.1.1.2 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N 0.61 56.0 4.92e-01 100.0% 93.0%
3925074 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.61 54.0 4.77e-01 99.2% 100.0%
3477818 2008.1.1.7 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.61 54.0 4.94e-01 100.0% 90.9%
3633649 7573.1.1.2 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N 0.61 55.0 4.75e-01 100.0% 93.5%
3931802 7585.1.1.0 a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins 0.61 49.0 4.83e-01 92.9% 81.5%
3831585 7573.1.1.2 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N 0.61 55.0 5.02e-01 100.0% 90.6%
4964951 2007.15.1.18 a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › DUF7509 0.60 55.0 4.96e-01 100.0% 84.1%
None 0.60 54.0 4.79e-01 99.2% 92.8%
5071496 7573.1.1.2 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N 0.60 52.0 4.95e-01 95.3% 98.0%
4942038 7573.1.1.2 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N 0.60 52.0 4.96e-01 95.3% 98.0%
4286517 2010.1.1.3 a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › EIIA-man 0.60 45.0 4.56e-01 98.4% 80.8%
1317914 7573.1.1.2 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N 0.60 52.0 4.83e-01 94.5% 89.9%
5000690 7573.1.1.2 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N 0.60 52.0 4.98e-01 94.5% 97.9%
None 0.59 52.0 4.03e-01 100.0% 48.9%
5078502 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.59 49.0 4.21e-01 91.3% 85.4%
3418569 7573.1.1.2 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N 0.59 53.0 4.85e-01 99.2% 97.0%
5035370 7573.1.1.2 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N 0.59 51.0 4.88e-01 94.5% 97.9%
3618802 7573.1.1.2 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N 0.58 51.0 4.79e-01 95.3% 92.3%
4457972 7516.1.1.102 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2, Glyco_trans_2_3 0.58 41.0 2.92e-01 77.2% 23.3%
3452826 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 46.0 4.55e-01 100.0% 79.3%
3320953 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.58 47.0 3.80e-01 89.0% 93.5%
4937657 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.58 47.0 3.44e-01 87.4% 71.4%
3686704 7573.1.1.2 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N 0.58 52.0 4.78e-01 100.0% 95.3%
3972136 2002.5.1.1 a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.58 47.0 3.81e-01 88.2% 73.2%
4944216 7573.1.1.1 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.58 51.0 4.88e-01 96.1% 97.9%
4943645 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 46.0 4.75e-01 87.4% 92.5%
5016676 2007.1.1.15 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › DUF2124 0.57 49.0 4.54e-01 92.9% 78.5%
4931052 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.56 39.0 3.85e-01 100.0% 65.9%
3869472 2006.1.6.13 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_3 0.56 48.0 4.33e-01 92.9% 91.4%
359061 2010.1.1.3 a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › EIIA-man 0.56 45.0 4.45e-01 100.0% 80.4%
3388170 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.55 38.0 3.91e-01 98.4% 73.3%
1140806 2002.5.1.1 a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.55 47.0 3.77e-01 93.7% 82.8%
3388874 2007.9.1.1 a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR 0.55 49.0 4.76e-01 100.0% 93.1%
4966186 2007.15.1.20 a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › PF26508 0.55 49.0 4.44e-01 100.0% 76.0%
4542302 2002.5.1.1 a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.55 46.0 3.69e-01 92.9% 80.8%
4771694 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.54 46.0 4.54e-01 100.0% 88.8%
4054365 2002.5.1.1 a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.54 43.0 3.54e-01 85.8% 76.3%
4013604 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.54 46.0 3.66e-01 92.9% 74.2%
3255461 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.54 30.0 3.58e-01 92.1% 81.2%
3398792 2005.1.1.13 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like 0.53 44.0 3.63e-01 92.9% 82.0%
3967298 2002.5.1.1 a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.53 48.0 3.82e-01 100.0% 78.4%
3942767 2002.5.1.1 a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.52 45.0 3.97e-01 94.5% 87.4%
3997273 7542.1.1.0 a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain 0.52 41.0 4.05e-01 94.5% 79.3%
3594922 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 42.0 4.09e-01 89.0% 85.0%