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FFSP_09252017_12_scaffold_64_prodigal-single.1__X__X__00039

Bact-Vir

FFSP_09252017_12_scaffold_64_prodigal-single.1__X__X__00039

Identity

Kingdom:
phage

Quality

79.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 394-491
PDB
Domain cluster: rep: ON968454.1__UXO93980.1__Pan3_58__00059__D5-101
D2 medium residues 12-125
PDB
D3 medium residues 132-220
PDB
Domain cluster: representative
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5058447 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 42.0 5.32e-01 83.1% 89.1%
5050966 101.1.11.2 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.64 35.0 3.43e-01 89.9% 49.5%
3603081 101.1.2.40 ↗ alpha arrays › HTH › HTH › winged helix domain › CPSase_L_D3 0.63 41.0 4.43e-01 85.4% 78.7%
3931341 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 40.0 4.08e-01 88.8% 65.6%
3783362 2004.1.1.455 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 0.52 44.0 2.71e-01 97.8% 80.5%
D4 medium residues 231-388
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c3jA01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.60 30.0 2.82e-01 74.7% 37.6%
7kx9A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 41.0 4.36e-01 84.8% 80.6%
2yhaA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 40.0 4.31e-01 84.8% 86.3%
3edpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 27.0 3.68e-01 98.1% 100.0%
3aimA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 42.0 3.45e-01 84.8% 89.4%
4rk0D01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 37.0 4.04e-01 89.2% 87.4%
3egcA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 37.0 4.00e-01 84.8% 85.7%
3k9gA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 42.0 3.71e-01 85.4% 84.1%
6k34A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 41.0 3.36e-01 84.8% 84.7%
7uuim01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 32.0 3.23e-01 84.2% 60.1%
4n5hX00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 40.0 3.27e-01 84.8% 86.7%
4ydrA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 41.0 4.04e-01 84.8% 97.0%
4impA02 3.40.50.11460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 40.0 3.70e-01 84.8% 77.7%
3bblA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.50 36.0 3.88e-01 84.8% 85.5%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964655 2008.1.1.17 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF559 0.80 53.0 6.30e-01 82.3% 95.5%
4957433 101.1.2.78 ↗ alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.59 27.0 3.88e-01 94.3% 100.0%
1866050 7590.1.1.0 ↗ a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs 0.55 45.0 4.19e-01 84.8% 75.1%
4978057 2007.1.14.7 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D 0.52 42.0 4.28e-01 88.0% 85.6%
D5 medium residues 492-574
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vd4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 36.0 4.01e-01 85.5% 88.7%
1wu2A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.53 30.0 3.15e-01 71.1% 57.1%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3393739 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.57 32.0 3.97e-01 88.0% 100.0%
3576729 375.1.1.146 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CCCH_Mcm10 0.56 29.0 3.48e-01 92.8% 72.7%
3258631 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.55 34.0 3.13e-01 90.4% 48.6%
4947644 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 36.0 4.17e-01 89.2% 96.7%
4024182 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 29.0 3.08e-01 92.8% 56.0%
3606351 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.51 37.0 3.32e-01 75.9% 99.1%