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FFSP_09252017_12_scaffold_64_prodigal-single.1__X__X__00067

Bact-Vir

FFSP_09252017_12_scaffold_64_prodigal-single.1__X__X__00067

Identity

Kingdom:
phage

Quality

64.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-138
PDB
D2 high residues 313-408
PDB
Domain cluster: rep: OM835951.1__UNI73656.1__KP12_246__00246__D220-313
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10544.16 best T5orf172 27.7 4.40e-06 99.0% 93.9%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.68 39.0 4.65e-01 100.0% 83.6%
3rjaA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.61 48.0 3.65e-01 85.4% 77.3%
5l6gA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.60 47.0 3.61e-01 85.4% 78.6%
2ipiA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.56 44.0 3.31e-01 85.4% 71.4%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.53 34.0 3.70e-01 86.5% 79.2%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.53 36.0 3.21e-01 97.9% 46.9%
1wojA00 3.90.1740.10 Alpha Beta › Alpha-Beta Complex › 2',3'-cyclic nucleotide 3'-phosphodiesterase fold › 2',3'-cyclic nucleotide 3'-phosphodiesterase superfamily 0.51 36.0 2.83e-01 71.9% 82.3%
1l3lA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.50 36.0 3.03e-01 75.0% 98.2%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4016088 821.1.1.3 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.83 78.0 7.54e-01 100.0% 97.1%
3735748 821.1.1.3 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.75 69.0 5.68e-01 100.0% 60.6%
4007508 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.70 36.0 4.86e-01 100.0% 98.0%
3396683 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.68 40.0 4.40e-01 94.8% 70.9%
3553670 11.1.6.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA-FIIND 0.59 52.0 4.66e-01 100.0% 86.7%
3915866 11.1.6.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA-FIIND 0.57 51.0 4.63e-01 100.0% 90.0%
3885877 11.1.6.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA-FIIND 0.56 49.0 4.49e-01 100.0% 83.8%
3281849 303.1.1.3 ↗ a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › DUF4189 0.54 42.0 4.06e-01 85.4% 92.9%
3666673 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 35.0 3.90e-01 100.0% 89.3%
3958897 4187.2.1.0 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.52 43.0 4.08e-01 99.0% 75.0%
4026870 101.1.2.111 ↗ alpha arrays › HTH › HTH › winged helix domain › RQC 0.51 42.0 4.10e-01 94.8% 87.3%
4267064 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.51 36.0 3.69e-01 86.5% 77.8%
3928777 101.1.2.154 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.51 39.0 3.73e-01 94.8% 70.9%