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FFSP_09252017_12_scaffold_64_prodigal-single.1__X__X__00097

Bact-Vir

FFSP_09252017_12_scaffold_64_prodigal-single.1__X__X__00097

Identity

Kingdom:
phage

Quality

82.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-45
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2clqA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.74 33.0 2.62e-01 90.7% 20.0%
1hfvA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 40.0 2.78e-01 72.1% 89.0%
7kggC02 3.30.2090.10 Alpha Beta › 2-Layer Sandwich › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 0.56 37.0 3.00e-01 93.0% 31.5%
2bisA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.53 37.0 2.33e-01 74.4% 43.5%
1vk6A02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 35.0 2.68e-01 74.4% 93.1%
1e8cA01 3.40.1390.10 Alpha Beta › 3-Layer(aba) Sandwich › Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 › MurE/MurF, N-terminal domain 0.51 38.0 3.09e-01 88.4% 82.2%
3f2bA08 1.10.150.870 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.51 40.0 2.96e-01 95.3% 56.9%
4c0tA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 31.0 2.49e-01 90.7% 29.3%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3741375 239.3.1.0 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain 0.62 31.0 2.16e-01 83.7% 15.6%
3713527 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.62 40.0 2.42e-01 100.0% 9.7%
3221565 59.1.1.1 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › RPC5 0.60 41.0 2.75e-01 72.1% 96.1%
3276009 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.58 47.0 3.13e-01 95.3% 20.5%
5048068 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.58 43.0 2.79e-01 86.0% 68.4%
3219454 2484.1.1.190 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 0.57 39.0 2.52e-01 74.4% 14.8%
3258301 63.1.1.0 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.56 44.0 3.14e-01 90.7% 58.6%
5048622 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.54 39.0 2.69e-01 83.7% 65.8%
4977779 2004.1.1.164 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc 0.54 43.0 3.01e-01 100.0% 41.8%
3257543 220.1.1.12 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.54 42.0 2.86e-01 95.3% 55.4%
4972412 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.54 38.0 2.58e-01 79.1% 33.3%
3586357 3785.1.1.1 ↗ a+b three layers › Suppressor of Fused, C-terminal domain › Suppressor of Fused, C-terminal domain › Suppressor of Fused, C-terminal domain › SARA_C 0.54 39.0 2.80e-01 79.1% 71.7%
3290645 2498.1.1.29 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 0.53 40.0 3.07e-01 90.7% 43.3%
3630285 109.4.1.1360 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CBF, NOC3p 0.53 42.0 2.32e-01 90.7% 6.1%
4969796 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.53 38.0 3.00e-01 81.4% 33.0%
4555960 391.1.2.3 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC 0.52 41.0 3.59e-01 100.0% 82.3%
3388329 7599.1.1.1 ↗ a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD 0.52 36.0 2.33e-01 74.4% 27.8%
3981417 2004.1.1.207 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_32 0.52 39.0 2.52e-01 86.0% 70.4%
3601942 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.52 39.0 2.87e-01 100.0% 33.7%
3470915 109.4.1.18 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA 0.51 34.0 2.10e-01 74.4% 8.7%
3560455 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 39.0 2.46e-01 97.7% 30.9%
2514242 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.51 37.0 2.79e-01 90.7% 28.1%
4332533 220.1.1.12 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.51 38.0 2.54e-01 93.0% 21.4%
4363149 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 41.0 2.20e-01 93.0% 28.4%
3586986 2498.1.1.29 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 0.50 37.0 2.79e-01 90.7% 34.1%