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FFSP_09252017_12_scaffold_64_prodigal-single.1__X__X__00138
Bact-VirFFSP_09252017_12_scaffold_64_prodigal-single.1__X__X__00138
Identity
- Kingdom:
- phage
Quality
72.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-24_125-155
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1d5aA03 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.64 | 46.0 | 3.34e-01 | 78.2% | 75.0% |
| 3o6qA02 | 3.30.70.2720 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 46.0 | 3.73e-01 | 83.6% | 39.5% |
| 3tupA02 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.62 | 45.0 | 3.81e-01 | 80.0% | 88.5% |
| 3b34A01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.62 | 46.0 | 3.23e-01 | 81.8% | 60.0% |
| 1bkcE00 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.60 | 43.0 | 2.82e-01 | 76.4% | 68.8% |
| 4u9rA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 42.0 | 3.85e-01 | 80.0% | 98.8% |
| 2jmzA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.60 | 36.0 | 2.57e-01 | 90.9% | 19.0% |
| 2pjdA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 41.0 | 3.04e-01 | 74.5% | 69.2% |
| 2xxlA01 | 3.30.1640.30 | Alpha Beta › 2-Layer Sandwich › mini-chromosome maintenance (MCM) complex, chain A, domain 1 › | 0.55 | 34.0 | 3.13e-01 | 92.7% | 43.6% |
| 4oc8A01 | 2.30.280.20 | Mainly Beta › Roll › PUA domain-like › | 0.55 | 41.0 | 2.82e-01 | 83.6% | 85.6% |
| 2rttA00 | 2.60.40.290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 40.0 | 3.31e-01 | 81.8% | 83.8% |
| 1hufA00 | 3.30.1570.10 | Alpha Beta › 2-Layer Sandwich › YopH tyrosine phosphatase N-terminal domain › Protein-tyrosine phosphatase, YopH, N-terminal domain | 0.53 | 47.0 | 3.61e-01 | 100.0% | 95.9% |
| 2atzA00 | 3.90.920.20 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like | 0.52 | 44.0 | 3.21e-01 | 98.2% | 63.6% |
| 3trkA01 | 3.90.70.110 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Alphavirus nsP2 protease domain | 0.52 | 38.0 | 2.93e-01 | 80.0% | 82.5% |
| 1sovA02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.51 | 39.0 | 2.74e-01 | 81.8% | 74.4% |
| 2gupA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 35.0 | 3.01e-01 | 74.5% | 43.3% |
| 3ztdF01 | 2.60.40.780 | Mainly Beta › Sandwich › Immunoglobulin-like › von Hippel-Lindau disease tumour suppressor, beta domain | 0.50 | 35.0 | 3.09e-01 | 76.4% | 62.2% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5081155 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.60 | 42.0 | 3.66e-01 | 74.5% | 90.0% |
| 3164197 | 304.5.1.5 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › HisG_C | 0.60 | 41.0 | 3.72e-01 | 72.7% | 79.5% |
| 2428745 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.59 | 39.0 | 2.61e-01 | 100.0% | 17.1% |
| 4944520 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.59 | 41.0 | 2.66e-01 | 81.8% | 17.4% |
| 5024788 | 304.59.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH889-like › MTH889-like › DUF211 | 0.58 | 40.0 | 3.62e-01 | 76.4% | 83.5% |
| 4964918 | 304.59.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH889-like › MTH889-like › DUF211 | 0.57 | 41.0 | 3.61e-01 | 80.0% | 80.0% |
| 5042257 | 256.1.1.0 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like | 0.55 | 38.0 | 2.87e-01 | 70.9% | 65.6% |
| 4449670 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.54 | 39.0 | 3.17e-01 | 76.4% | 53.3% |
| 4538961 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.54 | 37.0 | 3.35e-01 | 70.9% | 94.7% |
| 224043 | 219.1.1.12 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C9 | 0.53 | 39.0 | 2.94e-01 | 80.0% | 83.2% |
| 3460032 | 2485.1.1.55 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FAF1 | 0.53 | 44.0 | 3.28e-01 | 94.5% | 84.0% |
| 4029922 | 3238.1.1.1 ↗ | alpha superhelices › Mitochondrial mTERF-like › Mitochondrial mTERF › Mitochondrial mTERF › mTERF | 0.51 | 40.0 | 2.56e-01 | 87.3% | 16.6% |
D2
medium
residues 25-124