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FFSP_09252017_12_scaffold_64_prodigal-single.1__X__X__00182
Bact-VirFFSP_09252017_12_scaffold_64_prodigal-single.1__X__X__00182
Identity
- Kingdom:
- phage
Quality
71.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 45-113
Domain cluster:
rep: IMGVR_UViG_2513237067_000001-2513237067-2513475337__D1-59
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3e11A00 | 3.30.2010.20 | Alpha Beta › 2-Layer Sandwich › Zincin-like › | 0.63 | 55.0 | 4.69e-01 | 100.0% | 67.5% |
| 3urrA00 | 3.40.930.10 | Alpha Beta › 3-Layer(aba) Sandwich › Mannitol-specific EII; Chain A › Mannitol-specific EII; Chain A | 0.62 | 51.0 | 3.95e-01 | 95.7% | 40.8% |
| 2epkX01 | 3.30.160.230 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › N-acetyl-beta-d-glucosaminidase | 0.62 | 43.0 | 4.17e-01 | 95.7% | 63.7% |
| 1h65B00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 41.0 | 2.85e-01 | 73.9% | 26.6% |
| 3gaaB00 | 3.40.50.10900 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit | 0.57 | 47.0 | 3.39e-01 | 98.6% | 66.1% |
| 3lhoA01 | 3.10.180.50 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › | 0.56 | 46.0 | 3.15e-01 | 88.4% | 54.4% |
| 2kuiA02 | 3.30.10.20 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › | 0.56 | 43.0 | 4.33e-01 | 91.3% | 85.3% |
| 4ipeB04 | 1.20.120.790 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Heat shock protein 90, C-terminal domain | 0.55 | 49.0 | 4.00e-01 | 100.0% | 54.0% |
| 3v8xA01 | 2.170.130.10 | Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain | 0.55 | 39.0 | 3.13e-01 | 73.9% | 64.4% |
| 2fmlA02 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.55 | 38.0 | 2.90e-01 | 72.5% | 61.0% |
| 1y79101 | 1.10.1370.40 | Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › | 0.54 | 45.0 | 2.90e-01 | 100.0% | 25.9% |
| 5vqjA00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.54 | 42.0 | 2.98e-01 | 85.5% | 50.5% |
| 1iokA02 | 3.30.260.10 | Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain | 0.54 | 41.0 | 3.77e-01 | 98.6% | 62.0% |
| 2z5bA00 | 3.30.230.100 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.53 | 43.0 | 3.57e-01 | 89.9% | 74.8% |
| 2kudA01 | 3.30.10.20 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › | 0.53 | 40.0 | 3.99e-01 | 91.3% | 81.4% |
| 1vr5A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 41.0 | 3.29e-01 | 88.4% | 44.9% |
| 1kopA00 | 3.10.200.10 | Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase | 0.51 | 38.0 | 2.71e-01 | 79.7% | 64.1% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4990363 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.70 | 38.0 | 2.75e-01 | 73.9% | 19.5% |
| 4991663 | 2498.1.1.49 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › PhageMetallopep | 0.69 | 61.0 | 4.95e-01 | 97.1% | 56.0% |
| 4993689 | 2498.1.1.49 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › PhageMetallopep | 0.67 | 59.0 | 4.83e-01 | 97.1% | 57.6% |
| 3739141 | 2498.1.1.39 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like | 0.67 | 58.0 | 4.72e-01 | 98.6% | 56.3% |
| 3259628 | 2004.1.1.164 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc | 0.67 | 49.0 | 3.32e-01 | 76.8% | 29.4% |
| 4605745 | 2004.1.1.164 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc | 0.67 | 49.0 | 3.44e-01 | 78.3% | 35.6% |
| 3706651 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.67 | 47.0 | 3.32e-01 | 73.9% | 34.8% |
| 5048138 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.67 | 47.0 | 3.32e-01 | 73.9% | 39.2% |
| 5021698 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.66 | 59.0 | 3.92e-01 | 98.6% | 40.0% |
| 4024357 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.65 | 46.0 | 3.27e-01 | 73.9% | 37.6% |
| 3762854 | 2004.1.1.164 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc | 0.65 | 46.0 | 3.25e-01 | 75.4% | 35.1% |
| 3479356 | 2004.1.1.164 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc | 0.65 | 45.0 | 3.32e-01 | 73.9% | 42.7% |
| 4029242 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.64 | 47.0 | 3.15e-01 | 76.8% | 80.8% |
| 4024134 | 2498.1.1.65 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › MATCAP | 0.64 | 47.0 | 3.00e-01 | 100.0% | 15.3% |
| 4949375 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.64 | 58.0 | 3.54e-01 | 100.0% | 17.0% |
| 3507568 | 207.1.1.218 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27086 | 0.64 | 46.0 | 3.51e-01 | 79.7% | 32.1% |
| 3212814 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.63 | 44.0 | 3.13e-01 | 72.5% | 27.3% |
| 4999348 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.62 | 48.0 | 3.37e-01 | 84.1% | 51.4% |
| 3589865 | 311.1.1.0 ↗ | a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein | 0.61 | 47.0 | 4.12e-01 | 95.7% | 54.3% |
| 5037517 | 2011.2.1.7 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 | 0.61 | 53.0 | 3.66e-01 | 97.1% | 78.3% |
| 3390011 | 2498.1.1.39 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like | 0.61 | 53.0 | 3.82e-01 | 100.0% | 41.8% |
| 3377912 | 67.1.1.1 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C | 0.60 | 44.0 | 4.02e-01 | 76.8% | 98.9% |
| 4984900 | 2011.2.1.7 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 | 0.60 | 51.0 | 3.60e-01 | 97.1% | 91.3% |
| 3603079 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.59 | 44.0 | 3.48e-01 | 87.0% | 35.6% |
| 4027214 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.59 | 51.0 | 4.81e-01 | 100.0% | 78.8% |
| 3664396 | 2498.1.1.79 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Phi_1 | 0.59 | 52.0 | 3.48e-01 | 98.6% | 58.1% |
| 4933600 | 2011.2.1.7 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 | 0.59 | 50.0 | 3.64e-01 | 97.1% | 75.7% |
| 5054802 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.58 | 46.0 | 4.12e-01 | 95.7% | 60.0% |
| 5027993 | 2498.1.1.1 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M10 | 0.57 | 49.0 | 3.58e-01 | 100.0% | 50.2% |
| 4629817 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.57 | 42.0 | 4.36e-01 | 88.4% | 86.2% |
| 5070079 | 2011.2.1.7 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 | 0.56 | 48.0 | 3.42e-01 | 98.6% | 70.4% |
| 4153575 | 67.1.1.0 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain | 0.56 | 45.0 | 3.89e-01 | 88.4% | 70.0% |
| 5028020 | 2011.2.1.7 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 | 0.56 | 46.0 | 3.34e-01 | 98.6% | 67.0% |
| 4380775 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.55 | 45.0 | 3.39e-01 | 97.1% | 80.0% |
| 3703913 | 7529.1.1.0 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like | 0.55 | 39.0 | 3.10e-01 | 76.8% | 40.7% |
| 4607404 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.55 | 41.0 | 4.23e-01 | 91.3% | 87.7% |
| 4086298 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.54 | 39.0 | 4.07e-01 | 89.9% | 84.6% |
| 4231180 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.53 | 40.0 | 4.11e-01 | 91.3% | 87.7% |
| 3484890 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.52 | 42.0 | 3.83e-01 | 89.9% | 68.4% |
| 4434629 | 2003.1.1.88 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › OpcA_G6PD_assem | 0.52 | 45.0 | 3.27e-01 | 97.1% | 52.3% |
| 3587211 | 294.2.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA | 0.51 | 39.0 | 3.96e-01 | 89.9% | 84.3% |
D2
medium
residues 152-221