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FFSP_09252017_12_scaffold_64_prodigal-single.1__X__X__00186

Bact-Vir

FFSP_09252017_12_scaffold_64_prodigal-single.1__X__X__00186

Identity

Kingdom:
phage

Quality

72.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-91
PDB
Domain cluster: rep: BML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00169__D1-120
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.76 65.0 6.49e-01 93.3% 98.9%
1yd0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.65 51.0 5.11e-01 91.0% 83.1%
1zc1A01 2.40.40.50 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain 0.65 40.0 3.81e-01 73.0% 53.4%
2yuxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 34.0 3.24e-01 74.2% 47.2%
1wlfA01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.55 34.0 3.51e-01 74.2% 64.3%
2d5mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 48.0 3.85e-01 98.9% 83.1%
3bpkA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 48.0 3.85e-01 98.9% 88.8%
5z3gZ01 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.53 39.0 3.49e-01 88.8% 55.6%
2pjyC00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.53 34.0 3.58e-01 80.9% 73.4%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3505268 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.72 63.0 5.48e-01 95.5% 86.7%
4997210 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.72 53.0 5.35e-01 79.8% 76.7%
3963488 821.1.1.7 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG 0.72 63.0 5.76e-01 95.5% 84.3%
3946107 821.1.1.3 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.68 54.0 5.35e-01 92.1% 81.1%
3738005 3868.1.1.1 ↗ a+b three layers › Mitochondrial homologous recombination protein 1 › Mitochondrial homologous recombination protein 1 › Mitochondrial homologous recombination protein 1 › Mhr1 0.66 53.0 4.43e-01 87.6% 68.4%
5030770 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.65 53.0 5.20e-01 92.1% 82.1%
5070656 821.1.1.15 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508 0.65 47.0 4.82e-01 89.9% 80.0%
4929321 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 38.0 4.52e-01 86.5% 91.7%
3963369 4222.1.1.2 ↗ a+b two layers › ImmE5-like › ImmE5-like › ImmE5-like › Imm40 0.57 35.0 3.46e-01 97.8% 56.8%
3170371 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.57 39.0 3.51e-01 70.8% 64.2%
4032123 4112.1.1.1 ↗ beta duplicates or obligate multimers › YopX, N-terminal domain-like › YopX, N-terminal domain-like › YopX, N-terminal domain-like › YopX 0.55 34.0 3.96e-01 77.5% 91.7%
3604145 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 35.0 4.21e-01 79.8% 98.3%
3210904 12.6.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.54 46.0 4.03e-01 94.4% 98.5%
3404684 10.12.1.84 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom 0.54 40.0 3.03e-01 77.5% 88.1%
4202856 299.1.1.1 ↗ a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.53 45.0 3.82e-01 100.0% 71.5%
4946702 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 40.0 2.77e-01 83.1% 46.3%
3652557 1.1.2.9 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.52 39.0 3.95e-01 100.0% 81.1%
3535276 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.50 32.0 3.01e-01 79.8% 50.9%
D2 medium residues 190-245
PDB
Domain cluster: representative
D3 medium residues 253-312
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r7eA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 39.0 3.80e-01 86.7% 65.2%
1of5B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 3.10e-01 85.0% 70.3%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3517987 355.1.1.0 ↗ few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like 0.76 45.0 5.12e-01 78.3% 80.0%
5034231 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.65 44.0 3.13e-01 71.7% 94.4%
1554242 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.56 39.0 3.80e-01 86.7% 65.2%
3690337 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.55 39.0 3.67e-01 86.7% 60.0%
4595968 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 39.0 3.82e-01 80.0% 83.1%