←Back to structures
FFSP_09252017_12_scaffold_64_prodigal-single.1__X__X__00194
Bact-VirFFSP_09252017_12_scaffold_64_prodigal-single.1__X__X__00194
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-63
Domain cluster:
rep: IMGVR_UViG_3300004214_000238-3300004214-Ga0066646_100067342__D4-67
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3u60A02 | 1.20.272.50 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › Bacteriophage clamp loader A subunit, A' domain | 0.90 | 84.0 | 7.63e-01 | 100.0% | 79.5% |
| 3kzxA02 | 1.10.150.730 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.71 | 44.0 | 4.44e-01 | 77.0% | 61.3% |
| 3ih6E00 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.58 | 45.0 | 3.34e-01 | 90.2% | 90.1% |
| 3c18A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.58 | 47.0 | 3.97e-01 | 100.0% | 70.3% |
| 4jrrB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 45.0 | 3.42e-01 | 100.0% | 37.0% |
| 2el7A02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.56 | 46.0 | 4.11e-01 | 98.4% | 80.9% |
| 1v9mA02 | 1.20.1690.10 | Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain | 0.56 | 44.0 | 3.79e-01 | 88.5% | 77.2% |
| 1vquA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.54 | 37.0 | 3.68e-01 | 100.0% | 67.2% |
| 4m0mA02 | 1.10.1240.80 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.52 | 42.0 | 3.73e-01 | 98.4% | 63.0% |
| 7lwzB01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.52 | 35.0 | 2.55e-01 | 70.5% | 75.5% |
| 4cs9B02 | 1.20.120.1350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain | 0.51 | 41.0 | 3.63e-01 | 100.0% | 74.8% |
| 7crnA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 38.0 | 2.54e-01 | 86.9% | 19.5% |
| 1xx7A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.50 | 36.0 | 2.77e-01 | 80.3% | 70.3% |
| 2keoA00 | 3.10.120.10 | Alpha Beta › Roll › Flavocytochrome B2; Chain A, domain 1 › Cytochrome b5-like heme/steroid binding domain | 0.50 | 34.0 | 3.08e-01 | 73.8% | 47.8% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4872354 | 101.1.18.1 ↗ | alpha arrays › HTH › HTH › HTH domain in DNA polymerase accessory protein 62 › Phage_clamp_A | 0.91 | 85.0 | 6.78e-01 | 100.0% | 55.9% |
| 4494025 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.65 | 45.0 | 3.79e-01 | 72.1% | 79.0% |
| 3971935 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.62 | 54.0 | 4.48e-01 | 98.4% | 84.5% |
| 5052887 | 604.4.1.0 ↗ | alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP | 0.56 | 40.0 | 3.70e-01 | 75.4% | 78.8% |
| 3781065 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.54 | 40.0 | 3.50e-01 | 86.9% | 51.6% |
| 3987991 | 5086.1.1.94 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HB_LcnD | 0.54 | 40.0 | 2.80e-01 | 91.8% | 23.8% |
| 3897461 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 42.0 | 3.26e-01 | 93.4% | 72.5% |
| 5072742 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.52 | 44.0 | 2.89e-01 | 100.0% | 28.0% |
| 3605710 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.52 | 38.0 | 3.65e-01 | 82.0% | 89.3% |
| 2771713 | 7579.1.1.10 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Thioesterase | 0.51 | 38.0 | 2.53e-01 | 86.9% | 18.9% |
D2
medium
residues 80-116
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5zr4A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.86 | 75.0 | 5.44e-01 | 100.0% | 44.1% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.80 | 65.0 | 5.61e-01 | 91.9% | 77.6% |
| 2f4lA03 | 3.10.28.20 | Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains | 0.79 | 62.0 | 4.77e-01 | 86.5% | 57.5% |
| 1vioA01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.74 | 63.0 | 5.54e-01 | 100.0% | 96.6% |
| 6wshA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 62.0 | 5.40e-01 | 91.9% | 74.5% |
| 1lzwA00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.74 | 57.0 | 4.33e-01 | 89.2% | 68.1% |
| 2f8lA01 | 1.10.150.470 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.73 | 63.0 | 4.84e-01 | 97.3% | 48.1% |
| 6rxaA01 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.73 | 59.0 | 4.54e-01 | 94.6% | 72.4% |
| 3ousA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.72 | 55.0 | 4.32e-01 | 86.5% | 58.5% |
| 1u9lB00 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.67 | 57.0 | 4.68e-01 | 100.0% | 92.9% |
| 4i3vA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.66 | 55.0 | 3.32e-01 | 97.3% | 47.2% |
| 3r64A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.66 | 55.0 | 3.26e-01 | 97.3% | 43.5% |
| 1wgfA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.65 | 48.0 | 4.55e-01 | 94.6% | 90.6% |
| 7w5lA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.64 | 52.0 | 3.17e-01 | 94.6% | 48.4% |
| 3pqaB01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.64 | 52.0 | 3.14e-01 | 97.3% | 46.0% |
| 4yjmC00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.64 | 53.0 | 4.20e-01 | 100.0% | 61.4% |
| 1rp5A03 | 3.30.70.2110 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 50.0 | 3.89e-01 | 97.3% | 84.4% |
| 5ekcF01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.62 | 50.0 | 3.01e-01 | 97.3% | 42.0% |
| 1qusA01 | 1.10.8.350 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial muramidase | 0.59 | 46.0 | 3.51e-01 | 100.0% | 57.5% |
| 2rinA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 41.0 | 2.66e-01 | 78.4% | 60.1% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5074147 | 304.48.1.20 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Thg1 | 0.80 | 69.0 | 4.22e-01 | 100.0% | 64.3% |
| 3689134 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.71 | 64.0 | 5.24e-01 | 100.0% | 76.9% |
| 4591229 | 190.1.1.8 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › NUT | 0.66 | 50.0 | 3.97e-01 | 97.3% | 51.6% |
| 5082698 | 101.1.2.914 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6015 | 0.65 | 51.0 | 4.03e-01 | 94.6% | 95.6% |
| 4043422 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.57 | 49.0 | 3.95e-01 | 100.0% | 50.7% |
| 4963278 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.56 | 43.0 | 3.94e-01 | 100.0% | 75.0% |
| 4146098 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.54 | 43.0 | 3.60e-01 | 100.0% | 73.3% |