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FFSP_09252017_12_scaffold_64_prodigal-single.1__X__X__00228
Bact-VirFFSP_09252017_12_scaffold_64_prodigal-single.1__X__X__00228
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-126
Domain cluster:
rep: IMGVR_UViG_3300028797_000097-3300028797-Ga0265301_1000003392__D8-126
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01818.23 best | Translat_reg | 59.0 | 6.20e-16 | 100.0% | 91.0% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1regX00 | 3.30.70.650 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation repressor RegA | 0.90 | 85.0 | 8.46e-01 | 99.2% | 96.7% |
| 2xmjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 34.0 | 4.42e-01 | 75.0% | 95.2% |
| 2m88A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.61 | 35.0 | 4.04e-01 | 75.8% | 77.9% |
| 2mhyA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.53 | 24.0 | 3.13e-01 | 99.2% | 80.7% |
| 1vq0A02 | 3.90.1280.10 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like | 0.51 | 22.0 | 3.10e-01 | 95.8% | 84.2% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5303 | 304.40.1.1 ↗ | a+b two layers › Alpha-beta plaits › Translational regulator protein regA › Translational regulator protein regA › Translat_reg | 0.90 | 85.0 | 8.46e-01 | 99.2% | 96.7% |
| 4940409 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.62 | 39.0 | 4.57e-01 | 77.5% | 93.8% |
| 4931129 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.59 | 39.0 | 4.43e-01 | 77.5% | 92.9% |
| 3247756 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.57 | 42.0 | 3.74e-01 | 76.7% | 80.0% |
| 4330719 | 7512.1.1.24 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_5 | 0.52 | 41.0 | 3.19e-01 | 83.3% | 60.7% |
| 3954522 | 3108.1.1.0 ↗ | a+b two layers › Uncharacterized protein Atu1219 › Uncharacterized protein Atu1219 › Uncharacterized protein Atu1219 | 0.51 | 29.0 | 3.58e-01 | 93.3% | 92.9% |
| 3397702 | 3914.1.1.1 ↗ | alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin | 0.51 | 38.0 | 2.46e-01 | 79.2% | 81.7% |
| 3592555 | 304.166.1.0 ↗ | a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain | 0.51 | 36.0 | 3.95e-01 | 76.7% | 93.7% |
| 2801086 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.51 | 37.0 | 2.68e-01 | 75.0% | 48.9% |
| 4927852 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 36.0 | 4.03e-01 | 74.2% | 97.8% |