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FJ008913.1__ACH81940.1__B40-8004__00004

Bact-Vir

FJ008913.1__ACH81940.1__B40-8004__00004

Identity

Accession:
FJ008913 ↗
Kingdom:
phage

Quality

78.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bacteroides_phage_B40-8

TaxID: 99179

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-106
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2covG00 2.60.40.2450 Mainly Beta › Sandwich › Immunoglobulin-like › Beta-1,3-xylanase, CBM31 domain 0.66 40.0 4.29e-01 97.1% 70.5%
1fyhB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 40.0 4.19e-01 85.6% 72.2%
1osyA00 2.60.40.1790 Mainly Beta › Sandwich › Immunoglobulin-like › Fungal immunomodulatory protein Fve 0.60 39.0 3.85e-01 83.7% 60.5%
6se8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 43.0 4.33e-01 82.7% 75.9%
7u7nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 38.0 3.92e-01 83.7% 70.1%
1d5rA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 44.0 4.11e-01 100.0% 63.9%
3vh8G01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 35.0 3.74e-01 85.6% 68.8%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.57 49.0 5.08e-01 94.2% 100.0%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.56 26.0 3.32e-01 97.1% 80.4%
4nzdB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 35.0 3.54e-01 91.3% 60.6%
7cymA02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.55 38.0 3.73e-01 83.7% 66.7%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.54 40.0 3.57e-01 78.8% 68.2%
1lcsA00 3.90.310.10 Alpha Beta › Alpha-Beta Complex › Viral Glycoprotein Gp70 › ENV polyprotein, receptor-binding domain 0.54 42.0 3.42e-01 84.6% 62.9%
6udkD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.91e-01 83.7% 73.1%
5cyxA03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.53 35.0 3.49e-01 86.5% 64.2%
4iykA02 2.60.40.2060 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 41.0 3.97e-01 82.7% 76.3%
6vg1A01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.53 34.0 3.55e-01 83.7% 71.0%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.86e-01 79.8% 80.4%
1d6uA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.52 45.0 3.07e-01 100.0% 89.5%
2kz4A00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.51 46.0 4.54e-01 100.0% 92.0%
4fvdA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 38.0 4.03e-01 100.0% 88.3%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3881059 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 39.0 4.53e-01 83.7% 85.3%
3059162 1.1.13.30 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_GP41 0.64 57.0 5.40e-01 100.0% 96.0%
4057590 1.1.5.86 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN3 0.63 53.0 4.86e-01 100.0% 68.6%
3941988 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.63 56.0 5.50e-01 100.0% 98.3%
3960795 706.2.1.0 ↗ beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G 0.61 28.0 3.84e-01 80.8% 95.6%
3703567 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.59 39.0 3.59e-01 85.6% 53.1%
3875760 11.2.1.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_CAPS 0.58 44.0 2.97e-01 100.0% 21.6%
3504105 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.58 48.0 4.31e-01 100.0% 65.0%
3959431 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.58 44.0 4.55e-01 91.3% 85.7%
3710326 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 33.0 3.60e-01 100.0% 68.2%
3738810 4252.1.1.5 ↗ beta barrels › AttH-like › AttH-like › AttH-like › Svf1 0.57 37.0 3.14e-01 99.0% 38.9%
4028718 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.57 46.0 4.05e-01 100.0% 59.3%
3647964 11.1.1.203 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LacZ_4 0.57 42.0 4.27e-01 84.6% 79.0%
4029721 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.56 45.0 4.76e-01 100.0% 94.7%
3712933 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.56 48.0 4.31e-01 100.0% 66.9%
3315738 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.56 44.0 3.98e-01 100.0% 60.7%
3411245 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.56 51.0 3.73e-01 100.0% 43.7%
3497315 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.54 40.0 3.82e-01 83.7% 66.7%
3529281 11.2.1.75 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PF28455 0.54 47.0 3.95e-01 94.2% 82.3%
3937422 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.54 41.0 3.19e-01 100.0% 35.7%
3426807 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 44.0 3.98e-01 100.0% 66.2%
5046240 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 42.0 4.01e-01 98.1% 74.2%
3627428 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 44.0 4.00e-01 100.0% 69.6%
4060964 11.2.1.36 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › MAP10_N 0.52 42.0 3.68e-01 89.4% 80.4%
3726520 11.2.1.17 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › NT-C2 0.52 47.0 4.05e-01 100.0% 72.5%
3939482 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 43.0 3.86e-01 100.0% 65.5%
3720340 11.1.1.150 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Velvet 0.51 45.0 3.75e-01 95.2% 60.3%
5082328 1.1.13.77 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join_3 0.51 41.0 4.30e-01 100.0% 98.9%
4032920 237.1.1.11 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › RES 0.51 39.0 3.16e-01 82.7% 88.4%
3986836 375.1.1.253 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-IS66 0.51 24.0 3.06e-01 84.6% 80.0%
4030649 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.50 43.0 2.79e-01 95.2% 24.6%
3578827 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.50 36.0 3.08e-01 76.9% 84.9%