FJ608823.2ACM91124.1X__00006

Bact-Vir

FJ608823.2__ACM91124.1__X__00006

Identity

Accession:: FJ608823 ↗
Kingdom:: phage

Quality

85.0 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Vidaverviricetes› Mindivirales› Cystoviridae› Deltacystovirus› Pseudomonas_phage_phi2954

TaxID: 593131

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 527-554_573-703

PDB

Domain cluster: rep: OM650248.1__UNI73397.1__ER16_Large8__00008__D249-433

CATH (21)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1m62A00	1.20.58.120	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain	0.67	32.0	4.17e-01	77.4%	81.6%
2fnoA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.66	40.0	4.16e-01	81.1%	65.5%
3zc0D00	1.20.58.2140	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.62	31.0	2.91e-01	77.4%	38.5%
4iggB02	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.61	29.0	3.32e-01	77.4%	58.7%
3l9fA02	6.10.140.1570	Special › Helix non-globular › Helix Hairpins ›	0.60	31.0	4.26e-01	78.0%	98.8%
3geeA02	1.20.120.430	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2	0.57	34.0	3.36e-01	79.2%	54.8%
4aybA07	1.10.132.30	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain	0.56	36.0	4.10e-01	81.1%	85.8%
1o5hA00	1.20.120.680	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle	0.56	31.0	2.93e-01	77.4%	42.5%
2mx8A01	1.10.274.70	Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain	0.55	34.0	3.93e-01	96.9%	86.7%
2lqgA00	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.54	32.0	3.41e-01	81.8%	65.2%
1uurA01	1.20.58.240	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1	0.54	33.0	3.87e-01	78.0%	86.4%
1neiA00	3.30.160.220	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG	0.54	23.0	3.34e-01	71.1%	96.7%
2epkX03	1.20.120.670	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › N-acetyl-b-d-glucoasminidase	0.54	30.0	2.73e-01	79.2%	37.1%
2hj1A00	3.10.20.280	Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like	0.53	26.0	3.51e-01	91.2%	92.2%
2x1dA02	1.10.10.2120	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.53	26.0	3.53e-01	86.2%	95.9%
1s35A02	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.53	31.0	3.53e-01	77.4%	79.1%
2ckwA04	1.20.960.20	Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A ›	0.53	28.0	3.36e-01	80.5%	75.7%
1ug3A01	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.52	29.0	2.72e-01	82.4%	42.6%
3anwB00	1.20.58.2050	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.52	27.0	2.77e-01	74.8%	46.9%
1sumB02	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.51	33.0	3.76e-01	79.9%	87.3%
3wozB00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.50	26.0	2.31e-01	82.4%	32.3%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3675587	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.68	37.0	4.23e-01	82.4%	69.2%
3655684	7111.1.1.1 ↗	alpha bundles › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiq_cyt_C_chap	0.67	31.0	3.41e-01	76.1%	51.1%
3815681	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.61	34.0	3.32e-01	82.4%	49.4%
3547851	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.60	33.0	2.94e-01	82.4%	37.3%
3988025	192.7.1.3 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N	0.60	30.0	3.55e-01	77.4%	68.2%
3456183	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.59	33.0	4.13e-01	82.4%	88.0%
3238213	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.59	36.0	4.27e-01	78.0%	89.1%
4021335	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.58	35.0	2.28e-01	81.1%	13.6%
None	—		0.56	34.0	3.36e-01	90.6%	54.3%
4017863	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.56	30.0	3.29e-01	81.1%	61.5%
3681	133.2.1.1 ↗	alpha bundles › DH domain-like › Methenyltetrahydrofolate cyclohydrolase-like › Methenyltetrahydrofolate cyclohydrolase-like › FTCD_C	0.56	31.0	2.93e-01	77.4%	42.5%
3803063	109.4.1.238 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SRP_TPR_like	0.54	29.0	2.21e-01	81.8%	23.1%
3717803	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.53	38.0	3.36e-01	81.1%	50.6%
3175565	633.24.1.0 ↗	alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain	0.53	31.0	3.76e-01	82.4%	88.6%
4325032	140.1.1.5 ↗	alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1	0.51	34.0	3.35e-01	90.6%	61.1%
3730367	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	37.0	3.17e-01	76.1%	69.0%

D2 medium residues 23-46_308-327_444-503

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5xd6B01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.52	38.0	4.03e-01	77.9%	96.8%
4l68A01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.51	38.0	3.76e-01	77.9%	85.5%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2045452	3738.1.1.1 ↗	a+b complex topology › Major inner capsid protein P1 › Major inner capsid protein P1 › Major inner capsid protein P1 › P1	0.77	71.0	4.19e-01	100.0%	73.5%
3422152	206.1.1.20 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr	0.55	46.0	3.27e-01	94.2%	68.5%

D3 medium residues 47-220

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6xz3A01	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.53	33.0	3.94e-01	81.6%	92.3%
5x9vA01	1.10.560.10	Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain	0.50	42.0	3.75e-01	89.1%	63.7%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2045452	3738.1.1.1 ↗	a+b complex topology › Major inner capsid protein P1 › Major inner capsid protein P1 › Major inner capsid protein P1 › P1	0.80	75.0	4.81e-01	100.0%	26.5%
3288466	620.1.1.5 ↗	alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › MDMPI_N	0.56	28.0	2.97e-01	91.4%	50.3%
3596697	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.55	35.0	4.21e-01	82.8%	100.0%
5058985	7064.1.1.1 ↗	alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1	0.54	39.0	4.05e-01	82.2%	80.6%
4022777	109.4.1.22 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N	0.51	33.0	2.56e-01	85.6%	29.1%

D4 medium residues 221-307

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2r5uC00	1.10.860.10	Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A	0.53	44.0	3.89e-01	95.4%	75.4%

D5 medium residues 328-443_504-526_555-572

PDB

Domain cluster: rep: OM650248.1__UNI73397.1__ER16_Large8__00008__D23-127_227-248