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FJ608825.1__ACM91132.1__X__00004

Bact-Vir

FJ608825.1__ACM91132.1__X__00004

Identity

Accession:
FJ608825 ↗
Kingdom:
phage

Quality

88.9 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Vidaverviricetes› Mindivirales› Cystoviridae› Deltacystovirus› Pseudomonas_phage_phi2954

TaxID: 593131

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-62
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6v3zA00 1.20.141.10 Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 0.71 56.0 4.04e-01 88.3% 33.7%
1rp5A03 3.30.70.2110 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 60.0 5.23e-01 96.7% 70.0%
1wp9B03 1.20.1320.20 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › hef helicase domain 0.66 51.0 4.11e-01 88.3% 80.8%
2mn4A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.64 54.0 4.70e-01 96.7% 73.4%
2k3oA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.62 46.0 3.71e-01 83.3% 76.0%
1c0gA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.61 46.0 4.10e-01 85.0% 90.2%
2cgqA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.60 52.0 4.91e-01 100.0% 89.2%
3fm9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 45.0 4.26e-01 88.3% 93.6%
3mhsB00 1.10.246.140 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 0.57 44.0 3.91e-01 86.7% 74.7%
5ow2A00 1.10.10.930 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 43.0 4.03e-01 81.7% 76.7%
3dptB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 3.70e-01 100.0% 65.2%
4didB01 1.20.58.450 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cell division control protein 42 homolog 0.53 40.0 3.41e-01 88.3% 81.6%
3by4A00 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 38.0 2.76e-01 78.3% 86.0%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4998475 180.1.1.0 ↗ alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase 0.61 50.0 3.63e-01 95.0% 91.0%
3874067 7579.1.1.36 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.58 42.0 2.59e-01 76.7% 68.8%
None — 0.57 42.0 3.04e-01 81.7% 64.7%
3962984 2004.1.1.49 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase 0.56 37.0 2.68e-01 88.3% 24.0%
3217233 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 48.0 4.24e-01 100.0% 71.1%
3995333 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 42.0 4.21e-01 85.0% 85.0%
3615792 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.52 40.0 3.95e-01 88.3% 81.5%
D2 high residues 71-226
PDB
Domain cluster: rep: OQ791408.1__WID10864.1__phiG2_21__00021__D3-153
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01832.26 best Glucosaminidase 76.3 4.70e-21 91.7% 93.5%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qdnA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.84 61.0 6.97e-01 96.2% 97.5%
2zycA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.83 54.0 6.57e-01 100.0% 97.2%
7csxA02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 26.0 3.54e-01 84.6% 95.8%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 28.0 3.36e-01 85.3% 76.8%
5t9pA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 27.0 3.43e-01 82.7% 84.3%
1h2vZ00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 28.0 3.47e-01 84.6% 84.9%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 27.0 3.39e-01 84.6% 84.3%
2k3iA01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 29.0 3.71e-01 92.9% 100.0%
2jgtA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 32.0 3.38e-01 71.2% 68.8%
1qu6A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 26.0 3.46e-01 77.6% 97.4%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4007762 235.1.1.10 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase 0.85 79.0 7.62e-01 100.0% 87.9%
4680920 235.1.1.10 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase 0.85 79.0 8.06e-01 97.4% 100.0%
3590542 235.1.1.10 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase 0.83 77.0 7.66e-01 100.0% 95.0%
3508049 235.1.1.10 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase 0.83 72.0 7.29e-01 99.4% 92.3%
4520768 235.1.1.10 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase 0.83 77.0 7.45e-01 100.0% 89.9%
3285050 235.1.1.10 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase 0.78 73.0 7.17e-01 98.7% 95.8%
4025162 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.58 34.0 4.18e-01 82.1% 93.7%
3486980 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 30.0 3.59e-01 84.0% 82.9%
3667785 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.52 28.0 3.27e-01 84.0% 71.8%
3941757 101.1.9.32 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.50 29.0 3.12e-01 75.6% 65.4%
5029778 101.1.2.43 ↗ alpha arrays › HTH › HTH › winged helix domain › Pox_D5 0.50 24.0 3.00e-01 74.4% 72.2%
3613560 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.50 31.0 3.76e-01 96.8% 98.9%
3240347 3016.1.1.1 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.50 33.0 3.10e-01 88.5% 53.2%