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FM207411.1__CAR63215.1__SRSM4_018__00018
Bact-VirFM207411.1__CAR63215.1__SRSM4_018__00018
Identity
- Accession:
- FM207411 ↗
- Kingdom:
- phage
Quality
95.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Gibbetvirus›
Synechococcus_phage_S-RSM4
TaxID: 555387
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-38
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1grxA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.71 | 58.0 | 4.59e-01 | 100.0% | 54.1% |
| 1z7pA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.68 | 55.0 | 3.96e-01 | 97.2% | 76.1% |
| 2jacA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.68 | 53.0 | 4.01e-01 | 100.0% | 36.1% |
| 5jpoD01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.67 | 50.0 | 4.09e-01 | 94.4% | 43.9% |
| 1b48A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.66 | 50.0 | 3.97e-01 | 100.0% | 39.6% |
| 2lkuA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.66 | 52.0 | 4.04e-01 | 100.0% | 44.3% |
| 1pp0B00 | 3.40.198.10 | Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like | 0.62 | 37.0 | 2.30e-01 | 75.0% | 10.8% |
| 3ic4A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 42.0 | 3.47e-01 | 100.0% | 39.1% |
| 1kf6C00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.57 | 37.0 | 2.52e-01 | 86.1% | 17.7% |
| 4a18O00 | 3.30.390.110 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.54 | 39.0 | 2.64e-01 | 77.8% | 57.5% |
| 3nnqA00 | 1.10.340.70 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.51 | 38.0 | 2.91e-01 | 86.1% | 88.4% |
| 5hx0A00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.50 | 36.0 | 2.17e-01 | 86.1% | 16.7% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3963727 | 2485.1.1.3 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Glutaredoxin | 0.78 | 64.0 | 5.19e-01 | 100.0% | 48.0% |
| 3508063 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.74 | 62.0 | 5.34e-01 | 100.0% | 66.7% |
| 3996262 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.73 | 62.0 | 5.05e-01 | 100.0% | 58.6% |
| None | — | 0.72 | 57.0 | 3.60e-01 | 100.0% | 18.1% | |
| 4568280 | 2485.1.1.13 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GST_N | 0.72 | 56.0 | 4.69e-01 | 100.0% | 50.7% |
| None | — | 0.72 | 56.0 | 3.59e-01 | 100.0% | 18.1% | |
| 222300 | 2485.1.1.13 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GST_N | 0.71 | 55.0 | 4.52e-01 | 100.0% | 47.5% |
| 3644046 | 4120.1.1.0 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP | 0.69 | 38.0 | 3.10e-01 | 91.7% | 29.2% |
| 5040105 | 244.3.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › TSCPD | 0.68 | 45.0 | 3.27e-01 | 72.2% | 22.7% |
| 3680094 | 2485.1.1.3 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Glutaredoxin | 0.68 | 51.0 | 4.27e-01 | 100.0% | 48.8% |
| 3970432 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.67 | 53.0 | 3.46e-01 | 100.0% | 19.2% |
| 4963032 | 244.2.1.15 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › TSCPD | 0.67 | 45.0 | 3.23e-01 | 72.2% | 22.7% |
| 162622 | 2485.1.1.3 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Glutaredoxin | 0.66 | 51.0 | 3.88e-01 | 97.2% | 86.9% |
| 5082252 | 2485.1.1.3 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Glutaredoxin | 0.66 | 50.0 | 4.18e-01 | 100.0% | 46.3% |
| 3310947 | 2485.1.1.3 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Glutaredoxin | 0.66 | 51.0 | 3.91e-01 | 100.0% | 37.1% |
| 4869970 | 212.1.1.3 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N | 0.65 | 38.0 | 2.34e-01 | 75.0% | 9.3% |
| 1828364 | 1065.1.1.0 ↗ | alpha bundles › SPX domain › SPX domain › SPX domain | 0.63 | 37.0 | 2.41e-01 | 91.7% | 11.8% |
| 5033709 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.62 | 46.0 | 4.07e-01 | 94.4% | 60.0% |
| 3477885 | 109.1.1.29 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › Tom37+GST_C_6 | 0.61 | 46.0 | 2.92e-01 | 100.0% | 14.0% |
| 4996700 | 2485.1.1.38 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_3 | 0.61 | 45.0 | 3.66e-01 | 100.0% | 43.2% |
| 4263647 | 192.13.1.1 ↗ | alpha bundles › Long alpha-hairpin › ISY1 N-terminal domain-like › ISY1 N-terminal domain-like › Isy1 | 0.57 | 40.0 | 2.77e-01 | 80.6% | 37.9% |
| 3943336 | 7531.1.1.1 ↗ | a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase | 0.56 | 39.0 | 2.31e-01 | 100.0% | 9.3% |
| 5080196 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.56 | 41.0 | 2.58e-01 | 80.6% | 60.9% |
| 3553628 | 109.4.1.120 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Kinetochor_Ybp2 | 0.54 | 42.0 | 2.44e-01 | 86.1% | 18.6% |
| 4014236 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.54 | 45.0 | 3.23e-01 | 100.0% | 80.0% |
| 3960493 | 1001.1.1.0 ↗ | a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 | 0.54 | 41.0 | 2.88e-01 | 94.4% | 24.0% |
| 3327016 | 2485.1.1.67 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GILT | 0.53 | 41.0 | 3.12e-01 | 100.0% | 34.5% |
| 3240388 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.51 | 41.0 | 2.43e-01 | 91.7% | 31.9% |
| 4028626 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.51 | 37.0 | 2.63e-01 | 100.0% | 28.2% |
| 3489020 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.50 | 38.0 | 3.57e-01 | 100.0% | 65.5% |
| 4928624 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.50 | 37.0 | 2.42e-01 | 80.6% | 76.0% |