←Back to structures
FM207411.1__CAR63331.1__SRSM4_134__00134
Bact-VirFM207411.1__CAR63331.1__SRSM4_134__00134
Identity
- Accession:
- FM207411 ↗
- Kingdom:
- phage
Quality
86.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Gibbetvirus›
Synechococcus_phage_S-RSM4
TaxID: 555387
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-140
Domain cluster:
rep: IMGVR_UViG_3300021295_000028-3300021295-Ga0214522_100005533__D47-181
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qf6A02 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.71 | 43.0 | 4.86e-01 | 100.0% | 79.2% |
| 3e10A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.66 | 55.0 | 5.15e-01 | 100.0% | 72.9% |
| 3ek3A01 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.64 | 59.0 | 5.53e-01 | 100.0% | 82.1% |
| 3gr3A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.64 | 59.0 | 4.97e-01 | 100.0% | 74.8% |
| 5j62B00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.61 | 56.0 | 4.88e-01 | 100.0% | 77.0% |
| 1v4pC01 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.61 | 41.0 | 4.59e-01 | 100.0% | 88.0% |
| 7ly5B01 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.60 | 55.0 | 5.36e-01 | 100.0% | 98.0% |
| 1p1lA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 35.0 | 4.03e-01 | 92.0% | 80.4% |
| 8d7eC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 26.0 | 3.22e-01 | 86.2% | 64.3% |
| 3v5qB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.58 | 31.0 | 3.67e-01 | 87.0% | 77.0% |
| 1j2vA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 35.0 | 3.92e-01 | 92.8% | 83.2% |
| 2pulB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 28.0 | 3.26e-01 | 97.1% | 69.6% |
| 2w1zA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 36.0 | 3.59e-01 | 87.7% | 66.0% |
| 5optY00 | 3.30.70.3370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 31.0 | 3.29e-01 | 89.9% | 61.8% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1889996 | 304.103.1.2 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › QueG_DUF1730 | 0.78 | 74.0 | 6.61e-01 | 100.0% | 90.8% |
| None | — | 0.78 | 73.0 | 5.51e-01 | 100.0% | 54.4% | |
| 4137176 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.77 | 73.0 | 5.51e-01 | 100.0% | 53.8% |
| 4098191 | 205.1.1.0 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin | 0.77 | 72.0 | 5.42e-01 | 100.0% | 53.2% |
| 4355029 | 205.1.1.0 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin | 0.77 | 72.0 | 5.18e-01 | 100.0% | 51.4% |
| 5004590 | 205.1.1.0 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin | 0.77 | 73.0 | 5.77e-01 | 100.0% | 58.0% |
| 4945881 | 304.103.1.13 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Fer4_16 | 0.76 | 69.0 | 5.28e-01 | 100.0% | 45.5% |
| 4413563 | 205.1.1.0 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin | 0.76 | 71.0 | 5.34e-01 | 100.0% | 53.5% |
| 4972498 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.75 | 72.0 | 5.70e-01 | 99.3% | 58.0% |
| 1447956 | 304.103.1.4 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Dehalogenase | 0.75 | 71.0 | 5.27e-01 | 100.0% | 52.2% |
| 5045387 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.75 | 71.0 | 5.71e-01 | 100.0% | 55.2% |
| 5052835 | 205.1.1.21 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_16 | 0.75 | 62.0 | 4.98e-01 | 87.0% | 59.2% |
| 5051274 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.75 | 68.0 | 5.31e-01 | 100.0% | 48.9% |
| 5051510 | 304.103.1.12 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Fer4_7 | 0.75 | 71.0 | 5.49e-01 | 100.0% | 50.7% |
| 4944995 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.75 | 71.0 | 5.66e-01 | 100.0% | 55.2% |
| 4988403 | 205.1.1.0 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin | 0.74 | 68.0 | 5.84e-01 | 100.0% | 65.0% |
| 4971145 | 304.103.1.13 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Fer4_16 | 0.74 | 70.0 | 5.81e-01 | 100.0% | 65.8% |
| 4998207 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.74 | 70.0 | 6.51e-01 | 99.3% | 85.5% |
| 5034660 | 205.1.1.21 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_16 | 0.74 | 69.0 | 5.23e-01 | 100.0% | 52.1% |
| 3102591 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.74 | 69.0 | 4.96e-01 | 100.0% | 48.5% |
| 4984122 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.73 | 69.0 | 5.42e-01 | 100.0% | 60.0% |
| 5008619 | 205.1.1.21 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_16 | 0.73 | 69.0 | 5.68e-01 | 100.0% | 63.5% |
| 5073520 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.73 | 69.0 | 6.52e-01 | 100.0% | 91.3% |
| 4989326 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.72 | 65.0 | 6.28e-01 | 100.0% | 85.2% |
| 4986398 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.72 | 68.0 | 5.74e-01 | 98.6% | 70.0% |
| 5049634 | 205.1.1.1 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4 | 0.72 | 68.0 | 5.79e-01 | 100.0% | 66.7% |
| 4975760 | 205.1.1.21 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_16 | 0.72 | 67.0 | 5.08e-01 | 100.0% | 52.5% |
| 5076047 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.72 | 68.0 | 5.26e-01 | 100.0% | 56.2% |
| 5071339 | 304.103.1.13 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Fer4_16 | 0.71 | 66.0 | 5.07e-01 | 99.3% | 52.2% |
| 4960120 | 304.103.1.1 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase | 0.66 | 61.0 | 5.44e-01 | 100.0% | 74.2% |
| 4957232 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.63 | 41.0 | 4.71e-01 | 100.0% | 92.0% |
| 3685834 | 306.3.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like | 0.62 | 38.0 | 4.10e-01 | 89.9% | 72.2% |
| 3730653 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.61 | 23.0 | 3.25e-01 | 98.6% | 68.6% |
| 4928893 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.56 | 51.0 | 5.00e-01 | 100.0% | 91.7% |
| 3285458 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.56 | 43.0 | 4.44e-01 | 94.9% | 85.4% |
| 5066657 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.54 | 38.0 | 3.87e-01 | 100.0% | 71.4% |
| 4976530 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.54 | 29.0 | 3.00e-01 | 100.0% | 50.4% |
| 4395073 | 3016.1.1.11 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › SelA | 0.53 | 33.0 | 3.55e-01 | 100.0% | 71.7% |
| 3596299 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.51 | 29.0 | 3.32e-01 | 99.3% | 74.3% |
| 3548897 | 327.11.2.24 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_12 | 0.50 | 31.0 | 3.35e-01 | 94.2% | 70.0% |
D2
high
residues 157-223
Domain cluster:
representative