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FM207411.1__CAR63409.1__SRSM4_212__00212
Bact-VirFM207411.1__CAR63409.1__SRSM4_212__00212
Identity
- Accession:
- FM207411 ↗
- Kingdom:
- phage
Quality
72.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Gibbetvirus›
Synechococcus_phage_S-RSM4
TaxID: 555387
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 218-306
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fe9A01 | 2.60.40.3640 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.66 | 53.0 | 4.80e-01 | 87.6% | 80.0% |
| 4m4pA02 | 2.60.40.1770 | Mainly Beta › Sandwich › Immunoglobulin-like › ephrin a2 ectodomain | 0.60 | 34.0 | 3.98e-01 | 95.5% | 83.1% |
| 4b9gA00 | 2.60.40.3480 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 46.0 | 3.99e-01 | 89.9% | 87.0% |
| 4f8lA00 | 2.60.40.3590 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 45.0 | 3.95e-01 | 87.6% | 81.9% |
| 2vo8A00 | 2.60.40.680 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 47.0 | 4.16e-01 | 94.4% | 88.9% |
| 3fcsA04 | 2.60.40.1530 | Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 4 | 0.53 | 42.0 | 3.52e-01 | 88.8% | 83.4% |
| 1wq8A00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.53 | 43.0 | 4.20e-01 | 95.5% | 80.8% |
| 3mjkA00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.53 | 42.0 | 3.84e-01 | 95.5% | 62.8% |
| 1cyuA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 37.0 | 3.67e-01 | 97.8% | 68.4% |
| 2avtA02 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.52 | 32.0 | 2.56e-01 | 87.6% | 27.1% |
| 2rqlA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.52 | 35.0 | 3.49e-01 | 86.5% | 66.3% |
| 3h4zB03 | 3.15.10.50 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › | 0.51 | 44.0 | 3.54e-01 | 98.9% | 65.4% |
| 1x5aA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 41.0 | 4.07e-01 | 91.0% | 85.7% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5040065 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 52.0 | 4.56e-01 | 95.5% | 83.0% |
| 3580730 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.61 | 49.0 | 3.96e-01 | 87.6% | 90.0% |
| 5036970 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 50.0 | 4.56e-01 | 94.4% | 82.5% |
| 3541915 | 11.1.1.550 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_3 | 0.59 | 48.0 | 4.02e-01 | 91.0% | 90.6% |
| 5065315 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 46.0 | 4.26e-01 | 91.0% | 83.5% |
| 5082370 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 45.0 | 4.11e-01 | 91.0% | 86.7% |
| 5051939 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.55 | 41.0 | 3.77e-01 | 83.1% | 97.6% |
| 3391693 | 11.1.5.67 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CLSTN_C | 0.54 | 44.0 | 3.80e-01 | 91.0% | 91.3% |
| 2559745 | 11.1.1.365 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP1_ZP4_Ig-like | 0.54 | 43.0 | 4.06e-01 | 87.6% | 85.5% |
| 3930385 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 44.0 | 4.15e-01 | 91.0% | 79.1% |
| 4542150 | 243.1.1.44 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MBA1 | 0.53 | 46.0 | 3.62e-01 | 98.9% | 68.3% |
| 3936983 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.53 | 44.0 | 3.80e-01 | 94.4% | 89.3% |
| 3475387 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 43.0 | 3.60e-01 | 91.0% | 77.5% |
| 4878444 | 4169.1.2.1 ↗ | a+b three layers › Coronavirus spike protein receptor-binding domain › Coronavirus spike protein receptor-binding domain › Alpha-coronavirus spike protein receptor-binding domain › CoV_S1 | 0.52 | 39.0 | 4.05e-01 | 89.9% | 85.9% |
| 3521628 | 243.3.1.1 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin | 0.52 | 45.0 | 4.07e-01 | 100.0% | 73.6% |
| 4863883 | 4169.1.2.1 ↗ | a+b three layers › Coronavirus spike protein receptor-binding domain › Coronavirus spike protein receptor-binding domain › Alpha-coronavirus spike protein receptor-binding domain › CoV_S1 | 0.51 | 41.0 | 4.26e-01 | 94.4% | 92.9% |
| 3623361 | 385.1.1.5 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › PDGF | 0.51 | 43.0 | 3.88e-01 | 95.5% | 66.4% |
| 4963680 | 11.1.1.103 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB | 0.51 | 44.0 | 4.08e-01 | 97.8% | 82.6% |
| 5006871 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 42.0 | 3.91e-01 | 95.5% | 88.3% |
| 5043411 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.51 | 39.0 | 3.53e-01 | 85.4% | 82.3% |
| 3584011 | 385.1.1.5 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › PDGF | 0.51 | 43.0 | 4.37e-01 | 93.3% | 97.6% |
| 3175229 | 11.1.1.1099 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28268 | 0.50 | 40.0 | 4.05e-01 | 91.0% | 87.8% |