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FN538975.1__CBA18132.1__X__00001

Bact-Vir

FN538975.1__CBA18132.1__X__00001

Identity

Accession:
FN538975 ↗
Kingdom:
phage

Quality

90.3 mean pLDDT

Taxonomy

TaxID: 666474

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-75
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01844.30 best HNH 22.5 1.40e-04 56.9% 91.5%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1e7lA01 3.40.1800.10 Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases 0.72 56.0 5.39e-01 81.9% 80.0%
3m7kA00 3.30.40.220 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.71 59.0 4.72e-01 90.3% 54.9%
2yhoE00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.67 40.0 4.13e-01 80.6% 61.4%
5mnjH00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.66 46.0 4.83e-01 86.1% 82.8%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5049537 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.92 71.0 6.40e-01 80.6% 61.7%
3278018 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.92 68.0 7.70e-01 76.4% 100.0%
3952776 377.1.1.88 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.87 69.0 7.26e-01 83.3% 93.8%
3963404 377.1.1.88 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.86 65.0 5.89e-01 79.2% 82.1%
3953218 378.1.1.23 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF222 0.86 77.0 5.78e-01 100.0% 43.9%
3590055 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.86 74.0 6.13e-01 90.3% 77.4%
3957069 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.85 76.0 5.67e-01 100.0% 42.5%
4959591 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.85 68.0 7.19e-01 84.7% 98.5%
3953524 378.1.1.23 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF222 0.85 76.0 5.71e-01 100.0% 43.9%
3587782 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.84 71.0 6.06e-01 90.3% 78.2%
4932123 377.7.1.2 few secondary structure elements › Glucocorticoid receptor-like › 82 prophage-derived uncharacterized protein ybcO › 82 prophage-derived uncharacterized protein ybcO › HNH 0.83 75.0 7.66e-01 98.6% 100.0%
2485694 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.83 78.0 6.17e-01 100.0% 62.7%
3952892 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.82 74.0 6.00e-01 98.6% 55.2%
5039655 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.82 74.0 7.13e-01 95.8% 93.8%
3952384 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.82 73.0 6.56e-01 100.0% 72.6%
3953059 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.81 71.0 6.55e-01 100.0% 75.6%
4966182 378.1.1.9 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.81 75.0 6.14e-01 100.0% 88.0%
3952923 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.81 72.0 6.37e-01 100.0% 69.0%
3955812 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.81 74.0 6.73e-01 100.0% 76.3%
2449258 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.81 73.0 5.54e-01 100.0% 53.0%
4949181 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.80 70.0 6.97e-01 93.1% 92.0%
5070853 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.79 67.0 6.32e-01 90.3% 77.6%
185780 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.79 62.0 5.64e-01 84.7% 71.1%
3210225 378.1.1.9 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.79 73.0 6.02e-01 100.0% 89.2%
4951302 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.78 61.0 6.42e-01 83.3% 96.9%
3440476 378.1.1.10 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.78 64.0 5.39e-01 88.9% 68.1%
4998487 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.78 71.0 6.43e-01 100.0% 77.9%
3948700 378.1.1.9 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.78 70.0 5.73e-01 97.2% 89.5%
4999440 378.1.1.27 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 0.78 71.0 6.68e-01 100.0% 87.1%
5082962 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.77 69.0 5.98e-01 100.0% 72.7%
5080395 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.77 68.0 5.82e-01 98.6% 67.8%
4989310 378.1.1.27 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 0.77 63.0 4.53e-01 87.5% 41.8%
4981807 378.1.1.9 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.77 69.0 5.33e-01 100.0% 71.6%
3277754 377.1.1.88 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.76 68.0 6.89e-01 98.6% 98.6%
3950953 377.1.1.78 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH_5 0.76 67.0 6.82e-01 98.6% 98.6%
3952818 378.1.1.27 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 0.75 67.0 6.72e-01 98.6% 94.6%
4986026 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.75 62.0 4.51e-01 88.9% 42.2%
5019258 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.74 60.0 5.83e-01 88.9% 91.3%
5016552 378.1.1.10 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.74 66.0 5.73e-01 100.0% 90.9%
5000599 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.73 57.0 4.16e-01 81.9% 53.9%
4839754 378.1.1.2 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.72 64.0 5.05e-01 100.0% 71.7%
3561303 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.72 65.0 4.93e-01 100.0% 47.9%
3397473 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.72 65.0 5.43e-01 100.0% 65.8%
3879791 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.72 64.0 4.51e-01 100.0% 35.1%
4941657 377.1.1.88 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.71 61.0 6.05e-01 93.1% 93.3%
4943720 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.71 63.0 5.25e-01 100.0% 89.6%
3489023 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.70 63.0 5.32e-01 100.0% 67.5%
1684075 378.1.1.10 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.70 60.0 4.61e-01 95.8% 65.9%
2991844 378.1.1.10 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.70 61.0 5.32e-01 97.2% 95.4%
3978374 378.1.1.18 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF968 0.69 62.0 5.91e-01 100.0% 88.2%
3286852 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.65 59.0 5.27e-01 98.6% 76.0%
D2 high residues 103-156
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6e5bN00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.79 54.0 3.55e-01 70.4% 22.6%
6muwK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.73 50.0 3.41e-01 72.2% 24.1%
2nr7A00 1.20.141.10 Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 0.68 57.0 3.99e-01 100.0% 77.8%
2hszA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.68 47.0 4.16e-01 85.2% 52.0%
5h5mA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.67 57.0 4.37e-01 98.1% 77.7%
5deqB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 43.0 3.77e-01 74.1% 72.3%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.62 48.0 4.11e-01 88.9% 78.7%
3rhzA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.61 48.0 3.55e-01 90.7% 92.4%
2aj6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 47.0 3.78e-01 92.6% 93.3%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.60 40.0 2.76e-01 72.2% 19.5%
1qsmD00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 49.0 3.70e-01 100.0% 75.7%
2ee7A01 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.59 47.0 3.72e-01 90.7% 44.3%
5hxgB00 1.10.4000.10 Mainly Alpha › Orthogonal Bundle › Flagellar transcriptional activator fold › Flagellar transcriptional activator FlhD 0.57 43.0 4.09e-01 81.5% 70.8%
3tw6A06 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 40.0 4.09e-01 98.1% 79.6%
3l8kA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 47.0 3.17e-01 100.0% 31.8%
1r6bX03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.54 40.0 3.63e-01 90.7% 63.6%
3m03B00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 41.0 3.56e-01 92.6% 94.7%
2cgqA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.53 37.0 3.41e-01 87.0% 54.1%
2h92A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 38.0 2.64e-01 81.5% 23.1%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5039658 2003.1.1.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Shikimate_DH 0.73 49.0 3.44e-01 70.4% 91.9%
5000806 251.1.1.1 a+b two layers › FYSH domain › FYSH domain › FYSH domain › SBDS 0.70 55.0 4.25e-01 85.2% 50.4%
3617570 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.70 48.0 3.41e-01 72.2% 25.0%
3249252 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.66 57.0 3.54e-01 100.0% 30.6%
5053417 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.66 51.0 3.71e-01 85.2% 50.0%
5055246 103.6.1.1 alpha arrays › RuvA-C › FGAM synthase PurL, linker domain › FGAM synthase PurL, linker domain › FGAR-AT_linker 0.66 45.0 3.86e-01 74.1% 43.8%
3187418 601.1.2.149 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › PF30922 0.65 55.0 4.44e-01 100.0% 70.4%
3973548 5073.1.1.0 alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M 0.64 53.0 3.23e-01 100.0% 32.5%
4388780 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.62 43.0 3.09e-01 87.0% 26.9%
4452303 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 43.0 4.09e-01 74.1% 70.8%
3269341 101.1.10.22 alpha arrays › HTH › HTH › Cyclin-like › ORC6 0.61 47.0 4.03e-01 85.2% 86.7%
5082532 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 51.0 4.70e-01 92.6% 78.6%
1879330 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.59 46.0 3.98e-01 88.9% 84.6%
3590892 4070.1.1.2 alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.59 51.0 3.35e-01 98.1% 76.7%
3409412 101.1.10.19 alpha arrays › HTH › HTH › Cyclin-like › ORC6_2nd 0.58 45.0 3.85e-01 88.9% 90.5%
4034482 1076.1.1.0 alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related 0.56 49.0 3.28e-01 100.0% 28.4%
5083838 3896.1.1.0 alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase 0.54 44.0 3.05e-01 98.1% 28.9%
3945729 604.32.1.0 alpha bundles › Spectrin repeat-like › Recombination protein uvsY › Recombination protein uvsY 0.54 46.0 3.48e-01 96.3% 92.3%
3200940 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.54 43.0 3.25e-01 100.0% 92.1%