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FN667788.1__CBJ93931.1__CPT_0122__00122

Bact-Vir

FN667788.1__CBJ93931.1__CPT_0122__00122

Identity

Accession:
FN667788 ↗
Kingdom:
phage

Quality

92.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-102
PDB
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.84 79.0 5.87e-01 100.0% 43.4%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.82 75.0 5.57e-01 100.0% 46.3%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.78 71.0 5.30e-01 100.0% 46.3%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 69.0 5.75e-01 100.0% 65.7%
4trtA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 70.0 6.50e-01 100.0% 91.0%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.75 68.0 5.06e-01 100.0% 45.7%
4tr6A01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.75 67.0 5.52e-01 100.0% 66.1%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.74 67.0 5.58e-01 100.0% 64.5%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.73 66.0 6.18e-01 100.0% 89.5%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.73 66.0 6.29e-01 98.0% 95.6%
3pweA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.73 66.0 6.13e-01 100.0% 91.1%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.72 65.0 6.11e-01 100.0% 91.7%
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.72 65.0 5.96e-01 100.0% 91.5%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.72 65.0 5.97e-01 100.0% 85.9%
4trtA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.71 64.0 6.03e-01 100.0% 91.6%
5agvA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.70 62.0 5.69e-01 100.0% 91.6%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 31.0 4.39e-01 96.0% 100.0%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 29.0 3.58e-01 87.9% 86.2%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4599875 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.80 74.0 6.89e-01 100.0% 93.3%
4234515 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.77 70.0 6.53e-01 100.0% 95.0%
1549269 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.76 70.0 6.52e-01 100.0% 91.7%
3388280 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.76 69.0 6.48e-01 100.0% 90.0%
4995742 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.75 68.0 6.62e-01 100.0% 93.6%
4650306 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.75 68.0 6.38e-01 100.0% 93.3%
3387600 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.74 68.0 6.38e-01 100.0% 91.7%
4102438 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.74 67.0 6.32e-01 100.0% 93.3%
4480621 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.74 67.0 6.30e-01 100.0% 91.7%
1871494 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.74 68.0 6.31e-01 100.0% 90.9%
2987540 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.73 66.0 6.04e-01 100.0% 85.4%
5978 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.73 66.0 6.15e-01 100.0% 91.1%
4860663 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.73 66.0 5.88e-01 100.0% 79.3%
5977 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.72 65.0 6.11e-01 100.0% 91.7%
3839477 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.72 65.0 6.01e-01 100.0% 92.0%
4194202 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.72 65.0 6.01e-01 100.0% 89.6%
4569733 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.72 65.0 5.76e-01 100.0% 89.3%
1549270 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.71 64.0 6.04e-01 100.0% 93.2%
2878142 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.70 63.0 5.88e-01 99.0% 87.8%
144176 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.70 63.0 5.84e-01 100.0% 91.9%
3015240 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.70 63.0 5.88e-01 100.0% 91.8%
4591776 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.70 63.0 5.76e-01 100.0% 86.2%
4463778 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.69 62.0 5.82e-01 100.0% 92.5%
3281112 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.68 61.0 5.72e-01 100.0% 93.3%
4083029 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.68 61.0 5.64e-01 100.0% 88.8%
4069893 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.68 60.0 5.62e-01 100.0% 90.4%
1280955 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 29.0 3.57e-01 90.9% 73.8%
3941913 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.55 27.0 3.44e-01 90.9% 81.8%
5003862 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 30.0 2.68e-01 92.9% 40.7%
4276957 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.51 27.0 3.33e-01 91.9% 89.1%
4262261 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.50 27.0 3.39e-01 92.9% 90.9%
D2 high residues 111-225
PDB
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.84 77.0 5.98e-01 100.0% 48.7%
1sxjH02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 71.0 6.80e-01 100.0% 96.1%
8dqwG01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.75 69.0 5.95e-01 100.0% 97.1%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.75 70.0 5.27e-01 100.0% 48.1%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.75 70.0 5.29e-01 100.0% 47.8%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.73 68.0 5.28e-01 100.0% 49.6%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.73 68.0 5.23e-01 100.0% 49.6%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.73 67.0 5.19e-01 100.0% 46.9%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.72 67.0 4.87e-01 100.0% 47.3%
5wceA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.72 66.0 6.54e-01 100.0% 95.8%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.72 64.0 5.40e-01 100.0% 58.0%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.72 65.0 6.47e-01 99.1% 95.0%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.72 66.0 5.04e-01 100.0% 48.2%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.72 66.0 5.11e-01 100.0% 48.0%
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.72 64.0 5.07e-01 95.7% 49.8%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.70 65.0 4.87e-01 100.0% 43.9%
3hslX00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.70 62.0 4.61e-01 96.5% 44.9%
5aguA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.70 64.0 6.26e-01 100.0% 95.2%
1ud9A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.70 65.0 5.01e-01 100.0% 47.9%
4rkiA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.70 63.0 6.11e-01 100.0% 93.1%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.69 59.0 6.01e-01 93.0% 93.8%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.69 63.0 6.07e-01 100.0% 89.1%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.69 59.0 5.79e-01 94.8% 86.3%
4fxtA02 2.60.40.2060 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 32.0 3.33e-01 81.7% 57.9%
2bolA03 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 38.0 4.13e-01 82.6% 87.1%
1y4wA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 40.0 2.94e-01 80.0% 49.3%
5o16B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.51 42.0 3.21e-01 98.3% 37.9%
3afcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 37.0 2.49e-01 76.5% 31.2%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2392884 227.1.1.14 a+b two layers › DNA clamp › DNA clamp › DNA clamp › gp45-slide_C 0.84 75.0 7.42e-01 96.5% 90.0%
3251045 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.78 73.0 6.56e-01 100.0% 79.9%
3785352 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.77 68.0 6.01e-01 95.7% 88.5%
3873544 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.76 70.0 6.66e-01 100.0% 94.0%
3804177 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.76 66.0 6.09e-01 93.0% 93.8%
3782606 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.76 70.0 6.47e-01 100.0% 90.3%
4426056 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.75 70.0 6.26e-01 100.0% 86.5%
3256903 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.75 69.0 6.56e-01 100.0% 93.3%
2834343 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.75 69.0 5.87e-01 100.0% 93.4%
3934036 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.75 65.0 6.48e-01 93.0% 96.7%
3719143 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.75 66.0 6.27e-01 94.8% 90.4%
3744268 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.75 69.0 6.53e-01 100.0% 97.8%
3722115 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.75 68.0 6.21e-01 99.1% 96.0%
3939755 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.75 68.0 6.18e-01 97.4% 86.5%
3346536 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.74 66.0 6.12e-01 95.7% 86.9%
4936050 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.74 69.0 6.73e-01 100.0% 96.0%
3480669 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.74 65.0 6.04e-01 94.8% 90.9%
3719938 227.1.1.17 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_N 0.74 67.0 6.25e-01 98.3% 92.1%
3507498 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.74 65.0 5.90e-01 94.8% 88.7%
3789624 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.73 65.0 6.04e-01 94.8% 90.0%
3798354 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.73 67.0 6.38e-01 99.1% 96.3%
3244230 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.73 65.0 5.89e-01 94.8% 89.3%
4941929 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.73 68.0 6.58e-01 100.0% 93.0%
3223650 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.73 68.0 6.23e-01 100.0% 92.4%
4876750 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.73 67.0 6.53e-01 100.0% 91.2%
3623607 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.73 67.0 6.28e-01 99.1% 92.1%
5029787 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.73 68.0 6.74e-01 100.0% 95.8%
3625038 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.73 64.0 6.00e-01 94.8% 90.0%
5078494 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.73 64.0 6.23e-01 93.9% 89.6%
3596476 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.73 68.0 6.26e-01 100.0% 97.2%
3719304 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.73 67.0 6.38e-01 100.0% 91.0%
3598259 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.73 64.0 6.04e-01 93.9% 91.1%
143428 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.73 67.0 6.68e-01 100.0% 95.8%
3081033 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.73 64.0 6.26e-01 95.7% 99.2%
2492036 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.73 67.0 6.43e-01 100.0% 89.9%
4500973 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.73 67.0 6.56e-01 100.0% 94.3%
2096126 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.72 66.0 6.48e-01 100.0% 93.4%
3613685 227.1.1.17 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_N 0.72 64.0 6.00e-01 96.5% 90.7%
3015239 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.72 65.0 6.46e-01 100.0% 95.0%
4998585 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.72 66.0 6.58e-01 100.0% 95.8%
5039219 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.72 65.0 6.39e-01 100.0% 94.4%
3787700 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.71 65.0 5.88e-01 99.1% 98.1%
4508401 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.71 65.0 6.34e-01 100.0% 94.4%
5074321 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.71 65.0 6.35e-01 100.0% 93.6%
1178585 227.1.1.13 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc 0.70 62.0 5.79e-01 96.5% 91.5%
4287244 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.70 63.0 6.22e-01 99.1% 96.7%
3598260 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.69 63.0 6.12e-01 100.0% 100.0%
5037496 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.64 45.0 4.19e-01 96.5% 57.9%
3607300 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 28.0 3.59e-01 70.4% 93.3%
3601982 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 39.0 2.77e-01 79.1% 49.4%