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CBX88947.1

Arc-Vir

FR725450__CBX88947.1__X__00003

Identity

Accession:
FR725450 ↗
Protein ID:
CBX88947.1 ↗
Kingdom:
archaea

Quality

68.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nitrososphaera_phage_Pro-Nvie1

TaxID: 927392

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-62
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.71 51.0 3.71e-01 100.0% 27.2%
3bbzA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.70 42.0 4.37e-01 100.0% 64.6%
2j5iA02 6.10.250.2850 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.69 47.0 5.20e-01 100.0% 100.0%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.68 53.0 4.60e-01 98.1% 56.4%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 47.0 3.04e-01 100.0% 16.1%
4heoA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.66 46.0 4.60e-01 98.1% 70.9%
4g80T00 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.66 48.0 3.49e-01 90.4% 28.8%
1pd3A00 1.10.287.230 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 47.0 4.72e-01 100.0% 75.9%
3obfA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.64 51.0 3.72e-01 98.1% 97.7%
7x4oB01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.64 48.0 3.93e-01 88.5% 93.7%
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 46.0 4.20e-01 100.0% 60.6%
4i0xG00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.61 47.0 4.34e-01 100.0% 64.7%
2fzlA02 6.10.140.1180 Special › Helix non-globular › Helix Hairpins › 0.61 51.0 4.81e-01 94.2% 82.3%
3ecqA07 6.10.140.660 Special › Helix non-globular › Helix Hairpins › 0.60 34.0 3.64e-01 86.5% 64.4%
4ijjB00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.59 49.0 3.68e-01 100.0% 36.9%
3sibA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.59 47.0 3.16e-01 88.5% 36.5%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 48.0 4.61e-01 98.1% 77.4%
3fhnA04 1.20.58.670 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D 0.58 50.0 3.80e-01 100.0% 40.5%
1wolA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.58 51.0 3.92e-01 100.0% 66.4%
6cgaC02 1.20.58.860 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 48.0 4.22e-01 100.0% 62.8%
2btoA03 1.10.287.600 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.55 45.0 4.53e-01 90.4% 98.1%
3c8fA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 46.0 3.03e-01 96.2% 36.7%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 48.0 3.12e-01 98.1% 21.5%
5afdA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 46.0 2.89e-01 100.0% 69.3%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.54 46.0 4.29e-01 98.1% 98.5%
1r5aA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 46.0 3.46e-01 100.0% 45.6%
2lquA01 1.20.1420.40 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Decorin-binding protein 0.53 43.0 3.25e-01 100.0% 35.1%
1yq1A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 43.0 3.30e-01 88.5% 52.7%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.52 45.0 4.01e-01 98.1% 100.0%
2oyyA00 6.10.80.10 Special › Helix non-globular › DNA polymerase; domain 1 › Hexameric tyrosine-coordinated heme protein (HTHP) 0.52 45.0 4.14e-01 100.0% 85.9%
3qavA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 41.0 3.00e-01 88.5% 32.1%
2ckzA01 6.10.140.870 Special › Helix non-globular › Helix Hairpins › 0.51 37.0 3.86e-01 86.5% 89.6%
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.51 42.0 4.08e-01 98.1% 90.2%
3e22A03 1.10.287.600 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.51 43.0 4.28e-01 96.2% 90.7%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3588718 633.19.1.0 ↗ alpha bundles › Bromodomain-like › Hypothetical protein lpg2422 helical bundle domain › Hypothetical protein lpg2422 helical bundle domain 0.68 49.0 4.35e-01 100.0% 53.3%
3511720 60.1.2.2 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C 0.63 45.0 2.80e-01 75.0% 46.2%
3391978 3812.1.1.0 ↗ alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE 0.59 46.0 4.12e-01 98.1% 60.0%
3712866 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.59 49.0 3.88e-01 98.1% 44.5%
4676021 301.6.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C 0.57 45.0 3.05e-01 94.2% 61.7%
2843 101.1.10.8 ↗ alpha arrays › HTH › HTH › Cyclin-like › CDK5_activator 0.56 47.0 3.52e-01 98.1% 61.7%
3500290 101.1.12.0 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.55 44.0 3.81e-01 90.4% 56.2%
4031283 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.55 49.0 3.50e-01 100.0% 46.0%
4463756 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.55 49.0 4.40e-01 98.1% 72.9%
None — 0.54 46.0 2.82e-01 96.2% 16.0%
3623829 301.6.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C 0.54 44.0 2.98e-01 90.4% 25.3%
4344710 301.6.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C 0.53 44.0 2.93e-01 90.4% 23.6%
4882440 301.6.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C 0.53 46.0 3.13e-01 96.2% 28.8%
3629127 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.53 45.0 3.28e-01 100.0% 63.9%
5041482 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.52 46.0 3.79e-01 100.0% 80.0%
3594428 301.6.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like 0.51 45.0 3.03e-01 98.1% 62.5%
2712064 301.6.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C 0.51 45.0 3.01e-01 98.1% 63.8%
4201475 301.6.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C 0.50 44.0 3.00e-01 98.1% 64.2%