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CBX88973.1

Arc-Vir

FR725450__CBX88973.1__X__00029

Identity

Accession:
FR725450 ↗
Protein ID:
CBX88973.1 ↗
Kingdom:
archaea

Quality

68.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nitrososphaera_phage_Pro-Nvie1

TaxID: 927392

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-89
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4z7xB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.73 62.0 4.42e-01 95.6% 31.7%
1szhA02 1.10.150.370 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Caenorhabditis elegans Her-1, C-terminal domain 0.71 59.0 5.61e-01 100.0% 76.8%
3ghaA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.71 59.0 4.30e-01 94.1% 33.9%
4uobA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.71 61.0 5.00e-01 100.0% 52.4%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.70 60.0 5.76e-01 100.0% 91.4%
4dveA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.65 55.0 4.13e-01 100.0% 85.7%
2p11A02 1.10.286.50 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.64 57.0 5.55e-01 100.0% 91.9%
3if8B02 1.20.58.730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 44.0 3.94e-01 72.1% 73.0%
3k7dA03 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.64 47.0 3.85e-01 80.9% 91.0%
2bbrA02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.63 54.0 4.82e-01 100.0% 85.0%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 40.0 4.69e-01 76.5% 93.8%
2of5H00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.62 54.0 4.80e-01 98.5% 86.0%
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 44.0 4.65e-01 88.2% 96.6%
2vk9A03 1.10.3730.30 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › 0.59 51.0 4.59e-01 100.0% 89.8%
2oktA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 51.0 4.18e-01 100.0% 53.9%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 48.0 4.17e-01 98.5% 84.7%
3v5uA02 1.20.1420.30 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › NCX, central ion-binding region 0.58 48.0 3.38e-01 91.2% 81.0%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.58 50.0 4.18e-01 100.0% 58.9%
2p5kA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 39.0 4.06e-01 85.3% 77.8%
2bvlA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 48.0 4.55e-01 100.0% 94.2%
4z4qA04 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.56 39.0 3.62e-01 85.3% 56.2%
2hxoA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 42.0 3.41e-01 83.8% 51.4%
1q9cA01 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.56 47.0 3.66e-01 94.1% 64.6%
1k87A02 1.10.2060.10 Mainly Alpha › Orthogonal Bundle › PutA proline dehydrogenase (PRODH), domain 2 › PutA proline dehydrogenase (PRODH), domain 2 0.54 48.0 4.12e-01 100.0% 90.8%
2xzmV01 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.54 41.0 4.25e-01 92.6% 91.8%
4wzsB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.53 42.0 3.68e-01 89.7% 69.0%
3qwwA03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 45.0 3.35e-01 100.0% 73.8%
1cgnA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.53 39.0 3.22e-01 79.4% 59.7%
4q5nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 40.0 3.43e-01 85.3% 90.2%
3lnnB03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.51 33.0 3.34e-01 75.0% 65.7%
4cfsA02 1.10.210.20 Mainly Alpha › Orthogonal Bundle › Uteroglobin › 0.51 35.0 3.53e-01 73.5% 72.9%
2oduA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 39.0 3.47e-01 86.8% 85.7%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4927391 6049.1.1.0 ↗ alpha bundles › PH0832-like › PH0832-like › PH0832-like 0.75 63.0 6.33e-01 94.1% 90.0%
4929738 6049.1.1.0 ↗ alpha bundles › PH0832-like › PH0832-like › PH0832-like 0.72 61.0 5.96e-01 95.6% 88.0%
4232615 524.1.1.0 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p 0.70 47.0 3.73e-01 72.1% 34.5%
3245861 3009.1.1.1 ↗ alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › DSBA 0.69 59.0 4.10e-01 94.1% 29.1%
5000182 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.69 57.0 4.94e-01 91.2% 64.8%
3781503 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 44.0 4.74e-01 76.5% 80.0%
4024385 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.68 47.0 3.66e-01 72.1% 59.3%
5042605 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.66 55.0 4.99e-01 92.6% 73.1%
4934339 1075.1.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane 0.66 46.0 3.03e-01 73.5% 48.5%
2073547 621.1.1.2 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Smg8_Smg9 0.65 53.0 5.43e-01 88.2% 90.8%
3549820 110.1.1.3 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › DED 0.65 56.0 5.09e-01 100.0% 87.4%
5000777 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.65 45.0 4.09e-01 100.0% 53.2%
3237792 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.64 52.0 5.06e-01 89.7% 88.0%
3528233 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 51.0 4.95e-01 95.6% 78.7%
4026102 592.1.1.1 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.63 55.0 5.37e-01 100.0% 90.7%
4457750 3567.1.1.112 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › AI-2E_transport 0.62 53.0 4.65e-01 100.0% 61.8%
4935897 1075.1.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane 0.62 48.0 3.30e-01 86.8% 70.9%
5017110 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.61 43.0 4.16e-01 100.0% 65.0%
3926773 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.59 45.0 4.14e-01 95.6% 61.1%
5019497 1075.1.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane 0.59 44.0 3.17e-01 86.8% 72.5%
4297163 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.57 47.0 4.16e-01 97.1% 97.1%
5075461 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.56 48.0 4.04e-01 100.0% 60.8%
3570499 604.1.1.95 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › KIAA1755_C 0.55 41.0 3.76e-01 82.4% 87.4%
3969284 633.28.1.2 ↗ alpha bundles › Bromodomain-like › Tsi6 › Tsi6 › DUF4404 0.53 44.0 4.26e-01 100.0% 96.2%
3358888 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.52 42.0 3.61e-01 88.2% 64.5%
5016949 148.1.3.408 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AIPR 0.52 39.0 2.97e-01 100.0% 33.5%
2770964 5073.1.3.0 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Potassium-transporting ATPase subunit KdpB transmembrane domain 0.52 38.0 3.15e-01 76.5% 50.0%