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F

Euk-Vir

Hemileuca_sp._nucleopolyhedrovirus

F__YP_008378345__Hemileuca_sp._nucleopolyhedrovirus__1367203

Identity

Accession:
YP_008378345 ↗
Protein ID:
F
Kingdom:
euk

Quality

70.1 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Hemileuca_sp._nucleopolyhedrovirus

TaxID: 1367203

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 28-49_417-564
PDB
Domain cluster: rep: efp__YP_004376238__Clostera_anachoreta_granulovirus__283675__D22-47_387-525
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12259.14 best Baculo_F 184.1 6.80e-54 87.1% 23.6%
D2 medium residues 50-69_329-416
PDB
Domain cluster: rep: envelope_fusion_protein__YP_009345747__Mythimna_unipuncta_granulovirus_B__2169746__D27-50_306-403_477-502
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12259.14 best Baculo_F 119.2 3.00e-34 81.5% 13.8%
D3 medium residues 70-147
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12259.14 best Baculo_F 62.0 6.30e-17 100.0% 12.6%
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gczA03 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.87 66.0 7.24e-01 89.7% 95.4%
4ceiA03 6.10.250.2380 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.83 56.0 4.89e-01 75.6% 48.2%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.81 63.0 6.44e-01 82.1% 85.3%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.81 49.0 6.11e-01 89.7% 100.0%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.80 60.0 6.45e-01 79.5% 95.5%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.78 62.0 5.58e-01 84.6% 65.1%
3n5lA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 55.0 6.28e-01 75.6% 100.0%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.78 61.0 4.88e-01 83.3% 51.7%
1ucuA01 6.10.280.190 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 58.0 6.11e-01 80.8% 91.2%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.77 60.0 6.04e-01 83.3% 85.7%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.77 55.0 6.23e-01 94.9% 100.0%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.77 63.0 6.26e-01 89.7% 93.8%
4kzsA02 6.10.140.1870 Special › Helix non-globular › Helix Hairpins › 0.77 56.0 5.94e-01 100.0% 85.7%
1vx7301 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.77 57.0 5.86e-01 87.2% 82.4%
2r9iA00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.76 58.0 6.02e-01 82.1% 88.7%
3b2eF00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.76 56.0 6.16e-01 78.2% 100.0%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.75 58.0 5.82e-01 83.3% 91.0%
1a36A04 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.74 58.0 4.42e-01 83.3% 38.3%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.73 65.0 5.48e-01 100.0% 72.9%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.73 55.0 5.51e-01 82.1% 98.8%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.72 55.0 5.59e-01 88.5% 82.1%
7f16R01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.72 54.0 3.70e-01 80.8% 22.7%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 55.0 5.68e-01 93.6% 87.7%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.71 55.0 5.37e-01 100.0% 75.3%
3mvuA00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.71 55.0 4.00e-01 98.7% 29.5%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.71 55.0 5.37e-01 82.1% 76.5%
3lnnB03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.71 51.0 5.40e-01 76.9% 95.5%
4b6xA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 55.0 5.75e-01 87.2% 97.1%
2ctqA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.69 42.0 4.00e-01 79.5% 51.1%
2itbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.67 60.0 4.45e-01 100.0% 63.1%
1ylmA00 1.20.120.580 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like 0.67 62.0 4.99e-01 100.0% 87.3%
2wyhB04 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.66 51.0 4.68e-01 82.1% 63.4%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 58.0 5.09e-01 100.0% 79.2%
1b48A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.66 58.0 5.15e-01 100.0% 69.7%
2b3tB01 6.10.140.1980 Special › Helix non-globular › Helix Hairpins › 0.65 42.0 4.50e-01 96.2% 78.5%
3nrxA00 1.20.58.1520 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 57.0 4.95e-01 100.0% 65.0%
2x6hA03 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.55 40.0 3.03e-01 78.2% 47.5%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3770414 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.84 67.0 6.02e-01 84.6% 62.9%
3684566 192.15.1.85 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › DUF3755 0.82 64.0 6.36e-01 93.6% 80.0%
3476331 603.2.1.0 ↗ alpha bundles › STAT-like › STAT › STAT 0.81 75.0 6.29e-01 100.0% 88.0%
3629808 3291.1.1.130 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › CHDCT2 0.79 63.0 6.02e-01 84.6% 77.8%
4795626 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.78 60.0 4.02e-01 87.2% 22.4%
4315986 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.78 59.0 5.58e-01 92.3% 68.9%
3693258 604.7.1.1 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.77 68.0 6.03e-01 96.2% 87.3%
3502968 3684.1.1.23 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › CA109-like 0.77 70.0 5.17e-01 100.0% 73.3%
3386554 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.77 58.0 5.96e-01 80.8% 84.0%
3231045 101.1.1.117 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CHDCT2 0.76 62.0 5.58e-01 87.2% 64.8%
3988454 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.76 57.0 6.00e-01 82.1% 90.0%
3401938 3602.1.1.14 ↗ alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › DUF733 0.76 57.0 5.88e-01 80.8% 85.3%
3992995 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.75 65.0 5.88e-01 96.2% 70.9%
5017743 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.74 57.0 5.57e-01 82.1% 75.3%
3794577 3331.1.1.14 ↗ a+b two layers › Uncharacterized protein yibL › Uncharacterized protein yibL › Uncharacterized protein yibL › CHDCT2 0.73 58.0 5.70e-01 87.2% 88.2%
4819006 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.73 57.0 3.84e-01 87.2% 23.8%
3621551 601.19.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.72 64.0 5.08e-01 100.0% 83.7%
3986387 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.69 58.0 5.88e-01 100.0% 96.0%
3486085 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.65 58.0 5.05e-01 100.0% 77.5%
3968723 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.65 53.0 3.72e-01 89.7% 59.2%
4807210 5054.1.1.2 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.63 46.0 5.00e-01 88.5% 100.0%
3410238 2004.1.1.417 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.60 47.0 2.85e-01 85.9% 52.7%
3472066 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.59 44.0 4.57e-01 79.5% 98.7%
3798218 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 44.0 2.74e-01 87.2% 52.6%
3727885 109.27.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.50 36.0 3.47e-01 100.0% 64.4%