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F

Euk-Vir

Avian_paramyxovirus_penguin_Falkland_Islands_324_2007

F__YP_009094071__Avian_paramyxovirus_penguin_Falkland_Islands_324_2007__862945

Identity

Accession:
YP_009094071 ↗
Protein ID:
F
Kingdom:
euk

Quality

72.2 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Paramyxoviridae› Metaavulavirus› avian_paramyxovirus_10

TaxID: 862945

Cluster

View cluster (59 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 43-93_157-273
PDB
Domain cluster: rep: fusion_protein__BAV03983__Avian_paramyxovirus_goose_Shimane_67_2000__1401445__D50-98_121-280
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00523.24 best Fusion_gly 106.4 1.70e-30 70.8% 24.0%
D2 medium residues 31-42_275-380
PDB
Domain cluster: rep: F_protein__YP_009094481__Avian_metaavulavirus_11__2560310__D35-56_300-331_359-389
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00523.24 best Fusion_gly 69.8 2.10e-19 96.6% 21.8%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2b9bA01 2.40.490.10 Mainly Beta › Beta Barrel › Head and neck region of the ectodomain of NDV fusion glycoprotein › Newcastle disease virus like domain 0.94 72.0 7.39e-01 86.4% 81.6%
1g5gA01 2.40.490.10 Mainly Beta › Beta Barrel › Head and neck region of the ectodomain of NDV fusion glycoprotein › Newcastle disease virus like domain 0.92 75.0 7.81e-01 83.9% 90.9%
1ztmA01 2.40.490.10 Mainly Beta › Beta Barrel › Head and neck region of the ectodomain of NDV fusion glycoprotein › Newcastle disease virus like domain 0.86 70.0 7.32e-01 88.1% 91.7%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1738158 5093.1.1.1 ↗ a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Fusion_gly 0.93 75.0 5.17e-01 83.1% 96.8%
4873341 11.40.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-like domain in paramyxoviruses fusion protein › Immunoglobulin-like domain in paramyxoviruses fusion protein › Fusion_gly 0.93 78.0 5.47e-01 87.3% 96.3%
1737404 5093.1.1.1 ↗ a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Fusion_gly 0.93 78.0 5.41e-01 87.3% 96.1%
1175806 5093.1.1.1 ↗ a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Fusion_gly 0.91 80.0 5.74e-01 91.5% 43.7%
4872787 5093.1.1.1 ↗ a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Fusion_gly 0.90 69.0 5.14e-01 78.8% 43.3%
4871079 11.40.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-like domain in paramyxoviruses fusion protein › Immunoglobulin-like domain in paramyxoviruses fusion protein › Fusion_gly 0.90 76.0 5.40e-01 87.3% 96.4%
4881664 11.40.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-like domain in paramyxoviruses fusion protein › Immunoglobulin-like domain in paramyxoviruses fusion protein › Fusion_gly 0.90 79.0 5.81e-01 91.5% 47.6%
4871594 11.40.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-like domain in paramyxoviruses fusion protein › Immunoglobulin-like domain in paramyxoviruses fusion protein › Fusion_gly 0.89 78.0 5.44e-01 92.4% 38.6%
4884487 11.40.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-like domain in paramyxoviruses fusion protein › Immunoglobulin-like domain in paramyxoviruses fusion protein › Fusion_gly 0.89 77.0 5.35e-01 91.5% 37.1%
5034646 4.6.1.4 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › DUF5749 0.66 42.0 4.97e-01 75.4% 96.2%
3236647 5093.1.1.0 ↗ a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein 0.65 59.0 4.26e-01 98.3% 86.2%
5040273 4.6.1.4 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › DUF5749 0.65 41.0 4.94e-01 73.7% 100.0%
3237142 5093.1.1.0 ↗ a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein 0.64 58.0 4.21e-01 100.0% 93.2%
4192670 5093.1.1.5 ↗ a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Gypsy 0.63 56.0 4.09e-01 100.0% 84.2%
3829563 897.1.1.0 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 0.54 35.0 3.16e-01 74.6% 46.7%
5010808 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 30.0 3.44e-01 81.4% 76.5%
D3 medium residues 381-453
PDB
Domain cluster: rep: fusion_protein__YP_009094337__Salem_virus__120499__D386-442
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00523.24 best Fusion_gly 47.5 1.20e-12 100.0% 14.6%