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F

Euk-Vir

Diatraea_saccharalis_granulovirus

F__YP_009182223__Diatraea_saccharalis_granulovirus__1675862

Identity

Accession:
YP_009182223 ↗
Protein ID:
F
Kingdom:
euk

Quality

74.7 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Diatraea_saccharalis_granulovirus

TaxID: 1675862

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-36_274-357
PDB
Domain cluster: rep: F-protein__YP_009316158__Anticarsia_gemmatalis_multiple_nucleopolyhedrovirus__268591__D313-389
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12259.14 best Baculo_F 95.0 6.40e-27 92.5% 13.5%
D2 high residues 364-463
PDB
Domain cluster: rep: budded_virus_envelope_fusion_protein_EFP__YP_003429350__Artogeia_rapae_granulovirus__362830__D7-23_393-489
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12259.14 best Baculo_F 74.4 1.10e-20 100.0% 17.9%
D3 medium residues 44-106_132-218_262-273
PDB
Domain cluster: rep: F_protein__YP_006908522__Epinotia_aporema_granulovirus__166056__D48-94_115-259
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12259.14 best Baculo_F 35.7 5.70e-09 53.7% 13.1%
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qkwA00 1.20.1270.140 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AvrPto 0.75 32.0 4.16e-01 79.6% 68.3%
1kfdA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.74 33.0 4.95e-01 91.4% 97.2%
2kp8A00 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.71 32.0 4.61e-01 93.2% 94.4%
4etrB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.64 39.0 4.41e-01 85.2% 79.5%
3buxB01 1.20.930.20 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain 0.62 47.0 5.21e-01 87.0% 98.4%
2pmsC00 6.10.140.920 Special › Helix non-globular › Helix Hairpins › 0.61 35.0 4.23e-01 87.7% 83.5%
3bt5A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.60 46.0 4.74e-01 88.9% 84.1%
1vi0A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 26.0 2.75e-01 78.4% 43.4%
4cb8A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.58 33.0 2.30e-01 93.8% 18.0%
3vvaA00 1.20.1260.140 Mainly Alpha › Up-down Bundle › Ferritin › Alternative oxidase 0.57 42.0 3.58e-01 88.3% 47.0%
3nftA00 1.20.1710.10 Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like 0.57 44.0 3.79e-01 81.5% 84.7%
1ykeD00 6.10.280.10 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator complex, subunit Med21 0.57 33.0 3.95e-01 98.1% 83.2%
1bdp002 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.56 37.0 4.56e-01 92.6% 100.0%
3rh3A01 1.20.120.930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF12889, N-terminal DUF3829 0.55 42.0 4.60e-01 95.1% 96.2%
2uxwA04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.54 40.0 4.39e-01 92.0% 95.4%
3qa8A04 1.20.1270.250 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.54 42.0 3.69e-01 79.6% 85.4%
3pwxA01 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.53 44.0 4.20e-01 87.7% 76.1%
2oexA01 1.20.120.560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain 0.53 37.0 3.91e-01 71.6% 93.7%
5g5gA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.52 22.0 2.88e-01 75.9% 70.0%
1mabG00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.51 37.0 4.13e-01 98.8% 95.2%
2d1lA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.51 39.0 3.41e-01 79.6% 78.3%
1oahA02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.51 36.0 3.87e-01 73.5% 85.9%
2etdA00 1.20.1440.20 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain 0.50 39.0 4.24e-01 93.8% 92.9%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3407194 5093.1.1.2 ↗ a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Baculo_F 0.78 73.0 5.37e-01 100.0% 49.9%
5035274 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.77 37.0 4.31e-01 92.0% 63.3%
5054860 3755.3.1.305 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Rad50_zn_hook 0.73 38.0 3.62e-01 87.7% 44.3%
4948351 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.73 36.0 3.89e-01 87.7% 55.7%
3856019 604.1.1.92 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_desmoplakin_3 0.67 34.0 3.53e-01 87.0% 52.3%
4378410 3755.3.1.320 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › V_ATPase_I 0.66 39.0 3.93e-01 95.7% 58.8%
3904307 3755.4.1.70 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › KIF9 0.65 38.0 4.22e-01 87.7% 70.4%
4208090 605.1.1.156 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › UPF0114 0.65 34.0 3.56e-01 82.7% 54.2%
5036394 101.1.9.152 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_28 0.63 38.0 3.78e-01 95.7% 58.2%
3339004 611.9.1.4 ↗ alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N 0.61 48.0 5.13e-01 92.0% 98.5%
3185270 611.1.1.1 ↗ alpha bundles › N-cbl like › Transferrin receptor ectodomain, C-terminal domain › Transferrin receptor ectodomain, C-terminal domain › TFR_dimer 0.60 48.0 4.77e-01 82.7% 100.0%
3415933 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.60 37.0 3.84e-01 87.7% 65.3%
3832044 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.58 39.0 4.63e-01 78.4% 96.5%
3428029 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.58 36.0 4.46e-01 71.6% 100.0%
3622845 632.19.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A 0.57 35.0 3.93e-01 70.4% 79.2%
5007109 601.3.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt 0.56 35.0 3.98e-01 88.3% 79.2%
3655820 611.9.1.4 ↗ alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N 0.56 47.0 4.88e-01 96.9% 96.7%
3593528 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.55 36.0 3.78e-01 100.0% 72.0%
3192001 633.23.1.22 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.55 44.0 4.66e-01 86.4% 97.1%
4021431 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.54 44.0 4.75e-01 86.4% 98.6%
3454977 611.9.1.0 ↗ alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain 0.54 43.0 4.62e-01 85.8% 100.0%
4027588 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.54 36.0 3.67e-01 84.6% 68.1%
3499213 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 33.0 3.55e-01 87.7% 70.7%
3924837 6157.1.1.0 ↗ alpha bundles › GKAP homology domain 1 › GKAP homology domain 1 › GKAP homology domain 1 0.54 38.0 4.18e-01 76.5% 89.2%
5078892 604.5.1.1 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU_div 0.54 43.0 3.94e-01 96.3% 64.2%
3638080 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.54 44.0 4.62e-01 87.7% 100.0%
3892493 604.1.1.92 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_desmoplakin_3 0.53 33.0 3.54e-01 100.0% 70.3%
3818772 633.4.1.1 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.52 43.0 4.26e-01 95.1% 82.4%
3742963 3291.1.1.3 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Ist1 0.51 36.0 3.58e-01 98.1% 66.9%
3177832 174.1.1.62 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › PF27705 0.51 43.0 4.34e-01 99.4% 88.7%