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F_protein

Euk-Vir

Adoxophyes_orana_nucleopolyhedrovirus

F_protein__YP_002300632__Adoxophyes_orana_nucleopolyhedrovirus__542343

Identity

Accession:: YP_002300632 ↗
Protein ID:: F_protein
Kingdom:: euk

Quality

66.9 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Adoxophyes_orana_nucleopolyhedrovirus

TaxID: 542343

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 16-37_321-338_397-505

PDB

Domain cluster: rep: efp__YP_004376238__Clostera_anachoreta_granulovirus__283675__D22-47_387-525

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12259.14 best	Baculo_F	128.2	5.70e-37	84.6%	17.9%

D2 medium residues 38-52_310-320_339-396

PDB

Domain cluster: rep: F-protein__YP_009316158__Anticarsia_gemmatalis_multiple_nucleopolyhedrovirus__268591__D313-389

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12259.14 best	Baculo_F	69.9	2.50e-19	82.1%	9.8%

D3 medium residues 53-141_189-234

PDB

Domain cluster: rep: F_protein__YP_009165735__Perigonia_lusca_single_nucleopolyhedrovirus__1675865__D49-139_173-272

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12259.14 best	Baculo_F	54.6	1.10e-14	66.7%	14.0%
PF12259.14	Baculo_F	28.7	7.60e-07	37.0%	7.9%

D4 medium residues 235-309

PDB

Domain cluster: rep: envelope_fusion_protein__YP_009552688__Operophtera_brumata_nucleopolyhedrovirus__1046267__D277-336

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12259.14 best	Baculo_F	80.3	1.70e-22	100.0%	12.5%

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2v79A00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.57	38.0	3.31e-01	76.0%	45.2%
1dw9A02	3.30.1160.10	Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain	0.56	42.0	4.38e-01	82.7%	88.2%
2d42A02	3.10.450.380	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.56	32.0	3.36e-01	80.0%	61.5%
1nqzA00	3.90.79.10	Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase	0.54	37.0	2.88e-01	70.7%	76.0%
6qdws00	3.90.470.10	Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17	0.54	45.0	4.08e-01	97.3%	86.2%
2g1lA00	2.60.200.20	Mainly Beta › Sandwich › Tumour Suppressor Smad4 ›	0.53	34.0	3.09e-01	98.7%	47.6%
1lomA00	2.30.60.10	Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N	0.53	27.0	2.51e-01	93.3%	33.7%
5lvxC02	2.60.40.1180	Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II	0.53	32.0	2.81e-01	98.7%	41.7%
7jooC01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	29.0	2.64e-01	94.7%	42.3%
1vwxP00	3.90.470.10	Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17	0.50	43.0	3.47e-01	98.7%	82.4%

ECOD (18)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2028351	716.1.1.3 ↗	beta duplicates or obligate multimers › Trimeric autotransporter adhesin Trp ring domain › Trimeric autotransporter adhesin Trp ring domain › Trimeric autotransporter adhesin Trp ring domain › Hia_Tpr_ring_dom	0.68	31.0	3.73e-01	100.0%	62.0%
3399234	395.1.1.0 ↗	few secondary structure elements › Midkine-related › Midkine-related › Midkine-related	0.66	39.0	4.60e-01	92.0%	88.0%
3395022	394.1.1.1 ↗	few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14	0.64	35.0	3.59e-01	98.7%	54.8%
4012111	812.2.1.0 ↗	a+b duplicates or obligate multimers › MinE-like › Cyanase C-terminal domain › Cyanase C-terminal domain	0.59	43.0	4.66e-01	80.0%	93.7%
3591969	206.1.1.1 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase	0.57	47.0	3.09e-01	92.0%	26.2%
4940521	3124.1.1.1 ↗	beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › NAC	0.56	31.0	3.61e-01	89.3%	80.0%
4040865	314.1.1.2 ↗	a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b	0.56	40.0	2.61e-01	78.7%	95.1%
4944882	1.1.3.2 ↗	beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin	0.56	33.0	3.83e-01	94.7%	88.0%
3284913	3781.1.1.1 ↗	a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N	0.54	36.0	3.78e-01	97.3%	78.5%
4945650	878.1.1.0 ↗	a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677	0.54	37.0	3.38e-01	100.0%	53.0%
5031154	1.1.3.0 ↗	beta barrels › cradle loop barrel › RIFT-related › AbrB	0.53	35.0	3.79e-01	100.0%	85.0%
4102467	3326.1.1.1 ↗	alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA › UvrA_DNA-bind	0.53	41.0	3.63e-01	86.7%	99.1%
3225917	2498.1.1.23 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M49	0.51	43.0	2.56e-01	100.0%	60.1%
4886572	3326.1.1.1 ↗	alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA › UvrA_DNA-bind	0.51	41.0	3.64e-01	92.0%	97.5%
4942905	1.1.3.0 ↗	beta barrels › cradle loop barrel › RIFT-related › AbrB	0.51	31.0	3.53e-01	97.3%	100.0%
3583595	211.1.1.0 ↗	a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	0.50	34.0	3.79e-01	70.7%	100.0%
4978980	3326.1.1.0 ↗	alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA	0.50	40.0	3.50e-01	92.0%	96.8%
5056146	389.1.1.0 ↗	few secondary structure elements › EGF-like › EGF-related › EGF/Laminin	0.50	26.0	3.18e-01	74.7%	97.1%