F_protein

Euk-Vir

Epinotia_aporema_granulovirus

F_protein__YP_006908522__Epinotia_aporema_granulovirus__166056

Identity

74.5 mean pLDDT

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Epinotia_aporema_granulovirus

TaxID: 166056

View cluster (44 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 48-94_115-259

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12259.14 best	Baculo_F	153.3	1.40e-44	77.6%	26.8%

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6x4tA02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.63	20.0	2.93e-01	100.0%	58.8%
1vr4E00	3.30.110.70	Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B	0.60	24.0	3.39e-01	100.0%	75.3%
4k59A00	2.60.40.4380	Mainly Beta › Sandwich › Immunoglobulin-like › Translational regulator CsrA	0.56	19.0	3.12e-01	100.0%	83.3%
1vq8S00	3.30.70.330	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain	0.55	23.0	3.27e-01	97.9%	82.7%
2hfzA01	3.30.70.2840	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Flavivirus RNA-directed RNA polymerase, thumb domain	0.54	18.0	2.68e-01	100.0%	64.0%
2bolA03	2.60.40.790	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.53	22.0	3.21e-01	99.5%	82.8%
1ztmA02	1.10.287.2480	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.52	49.0	4.84e-01	100.0%	97.0%
2yfaA02	1.20.1440.210	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.51	31.0	3.91e-01	98.4%	100.0%
7r3eB02	3.30.450.80	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain	0.51	28.0	3.01e-01	100.0%	60.1%
2r78C00	3.30.450.20	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain	0.50	27.0	3.32e-01	99.5%	82.8%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3896686	192.8.1.36 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › M_domain	0.63	24.0	3.30e-01	91.1%	66.0%
3329735	327.11.2.37 ↗	a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_DEAH11_1st	0.59	20.0	3.16e-01	99.5%	77.1%
3199571	331.4.1.0 ↗	a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1	0.52	23.0	2.88e-01	100.0%	64.8%
3921818	256.1.1.0 ↗	a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like	0.52	22.0	3.39e-01	100.0%	97.3%
3580266	382.1.1.0 ↗	few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like	0.51	17.0	2.71e-01	100.0%	78.5%
3654270	611.7.1.15 ↗	alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Rx_N	0.50	35.0	4.02e-01	90.6%	100.0%
3633527	3755.1.1.0 ↗	alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related	0.50	25.0	2.92e-01	82.8%	64.3%

D2 medium residues 19-29_355-423

PDB

Domain cluster: rep: efp__YP_009121808__Spodoptera_frugiperda_granulovirus__307454__D424-487

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12259.14 best	Baculo_F	75.7	4.40e-21	90.0%	11.5%

D3 medium residues 30-47_263-354_424-467

PDB

Domain cluster: rep: envelope_fusion_protein__YP_009345747__Mythimna_unipuncta_granulovirus_B__2169746__D27-50_306-403_477-502

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12259.14 best	Baculo_F	127.6	8.40e-37	65.6%	16.9%