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F_protein

Euk-Vir

Buzura_suppressaria_nucleopolyhedrovirus

F_protein__YP_009001897__Buzura_suppressaria_nucleopolyhedrovirus__74320

Identity

Accession:
YP_009001897 ↗
Protein ID:
F_protein
Kingdom:
euk

Quality

70.0 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Buzura_suppressaria_nucleopolyhedrovirus

TaxID: 74320

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 24-40_409-550
PDB
Domain cluster: rep: efp__YP_004376238__Clostera_anachoreta_granulovirus__283675__D22-47_387-525
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12259.14 best Baculo_F 170.2 1.10e-49 96.9% 23.0%
D2 medium residues 41-51_324-408
PDB
Domain cluster: rep: F-protein__YP_009316158__Anticarsia_gemmatalis_multiple_nucleopolyhedrovirus__268591__D313-389
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12259.14 best Baculo_F 111.5 6.50e-32 91.7% 13.1%
D3 medium residues 52-63_250-323
PDB
Domain cluster: rep: envelope_fusion_protein__YP_009552688__Operophtera_brumata_nucleopolyhedrovirus__1046267__D277-336
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12259.14 best Baculo_F 92.6 3.30e-26 93.0% 12.2%
D4 medium residues 64-135_200-249
PDB
Domain cluster: rep: hypothetical_protein_SlsnVgp128__YP_009505937__Spodoptera_littoralis_nucleopolyhedrovirus__10456__D60-123_211-267
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF12259.14 best Baculo_F 49.0 5.50e-13 60.7% 11.3%
PF12259.14 Baculo_F 45.6 5.60e-12 43.4% 8.5%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sxjB03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.72 32.0 3.71e-01 91.0% 56.5%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.72 47.0 4.64e-01 98.4% 60.9%
2qqyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.70 54.0 5.18e-01 100.0% 71.7%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.69 36.0 4.39e-01 99.2% 79.7%
4im0A04 1.20.1270.420 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.67 50.0 3.94e-01 77.0% 83.6%
3fedA03 1.20.930.40 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Transferrin receptor-like, dimerisation domain 0.66 58.0 5.36e-01 95.9% 100.0%
4qndA00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.65 33.0 3.64e-01 92.6% 59.8%
3zciA00 1.20.58.1660 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 59.0 5.09e-01 100.0% 90.1%
1xlyA00 1.20.200.20 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › She2 domain 0.65 50.0 4.09e-01 82.0% 99.6%
1avoB00 1.20.120.180 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain 0.61 45.0 4.35e-01 77.0% 88.6%
1oe8A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 34.0 3.41e-01 92.6% 53.2%
1aepA00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.61 43.0 4.00e-01 73.0% 98.7%
3qsgA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.60 33.0 3.38e-01 91.0% 54.8%
4cmyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.59 50.0 4.53e-01 98.4% 68.1%
1kz7A01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.59 53.0 4.60e-01 100.0% 82.4%
7sk7A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.58 40.0 3.12e-01 88.5% 34.0%
1uruA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.57 43.0 3.61e-01 78.7% 89.5%
2ap3A00 1.20.120.570 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YkyA-like 0.57 45.0 3.77e-01 81.1% 57.3%
3f7cA00 1.20.1590.10 Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like 0.57 44.0 3.71e-01 92.6% 49.7%
3iqcA00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.56 46.0 4.65e-01 95.1% 88.2%
1m4rB00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.55 41.0 3.96e-01 90.2% 68.8%
3mk7A00 1.20.210.10 Mainly Alpha › Up-down Bundle › Cytochrome C Oxidase; Chain A › Cytochrome c oxidase-like, subunit I domain 0.55 49.0 3.31e-01 100.0% 30.0%
1x04A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.53 47.0 3.94e-01 95.1% 73.0%
8hk0C01 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.53 48.0 4.47e-01 99.2% 92.0%
2rfqC03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.52 47.0 4.21e-01 100.0% 82.3%
6xkyA01 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.52 48.0 4.12e-01 100.0% 77.5%
2lseA00 1.20.120.1360 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.52 36.0 3.94e-01 91.0% 87.1%
3kv0A01 1.10.3520.10 Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein 0.50 44.0 3.93e-01 93.4% 99.4%
4q5nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.50 36.0 3.80e-01 77.0% 81.2%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3514956 601.1.2.2 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › I_LWEQ 0.72 64.0 5.41e-01 95.9% 75.9%
3875862 192.7.1.83 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › KIF9 0.70 44.0 4.38e-01 100.0% 61.6%
5082020 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.68 48.0 3.39e-01 73.0% 56.1%
4966860 150.1.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin 0.67 54.0 5.31e-01 99.2% 80.8%
3230572 4177.2.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › Inhibitor of kappaB kinase beta dimerization domain › Inhibitor of kappaB kinase beta dimerization domain 0.66 51.0 3.66e-01 78.7% 63.3%
4392536 1189.1.1.11 ↗ alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › Tektin 0.66 50.0 4.00e-01 77.9% 81.3%
4988621 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.66 46.0 3.60e-01 73.0% 68.1%
3643409 5001.1.1.80 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Dicty_CAR 0.65 49.0 3.67e-01 78.7% 92.5%
2895299 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.65 55.0 4.89e-01 100.0% 64.9%
4210734 632.22.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA 0.64 48.0 5.16e-01 76.2% 94.3%
3493827 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.64 59.0 5.76e-01 97.5% 96.2%
3196270 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.64 46.0 4.74e-01 73.8% 91.3%
5021548 3562.1.1.0 ↗ alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 0.64 47.0 4.46e-01 75.4% 94.3%
3789506 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.64 45.0 4.47e-01 73.8% 84.6%
3405706 174.1.1.1 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.63 57.0 5.60e-01 100.0% 90.8%
3725612 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.63 45.0 4.22e-01 73.8% 72.0%
4399468 150.1.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin 0.63 52.0 4.72e-01 100.0% 66.1%
4024003 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.63 47.0 4.46e-01 78.7% 80.7%
4261813 4177.2.1.4 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › Inhibitor of kappaB kinase beta dimerization domain › Inhibitor of kappaB kinase beta dimerization domain › ATG17_like 0.63 47.0 3.38e-01 77.9% 72.9%
3617985 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.62 44.0 3.96e-01 73.8% 93.7%
3457403 633.4.1.1 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.61 53.0 5.24e-01 99.2% 87.7%
2967092 192.29.1.298 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PF30778 0.60 53.0 5.30e-01 95.9% 96.9%
3958339 1075.5.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.60 47.0 4.73e-01 85.2% 80.8%
3388223 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.60 41.0 4.21e-01 75.4% 71.7%
4967072 5067.1.1.12 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › UPF0014 0.57 41.0 3.56e-01 86.9% 48.6%
3228302 601.1.2.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.57 49.0 4.95e-01 93.4% 100.0%
5046013 5039.1.1.0 ↗ alpha bundles › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like 0.56 42.0 4.03e-01 78.7% 69.9%
4014803 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.56 50.0 4.50e-01 94.3% 78.8%
3589614 601.1.2.99 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › DAGK_prokar 0.56 39.0 3.93e-01 71.3% 75.6%
3780136 604.3.1.11 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 0.55 40.0 4.15e-01 75.4% 100.0%
3697268 6155.1.1.2 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.55 40.0 4.12e-01 77.0% 77.5%
4544758 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.55 39.0 4.08e-01 97.5% 80.0%
4002622 6155.1.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.55 37.0 4.00e-01 75.4% 81.0%
4023423 5057.1.1.0 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.54 47.0 4.09e-01 93.4% 78.3%
3708137 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.53 45.0 4.18e-01 92.6% 95.6%
3264733 6155.1.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.53 39.0 4.42e-01 79.5% 97.9%
3233367 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.53 48.0 4.85e-01 99.2% 100.0%
3661547 109.3.1.182 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Rx_N 0.53 47.0 4.51e-01 98.4% 98.6%
4862444 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.53 47.0 4.58e-01 100.0% 99.3%
4957532 3755.3.1.637 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 0.53 47.0 4.61e-01 100.0% 90.8%
3472426 6155.1.1.2 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.51 36.0 3.83e-01 80.3% 82.7%
4614519 5067.1.1.12 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › UPF0014 0.50 39.0 3.31e-01 83.6% 48.3%
3276372 5001.1.1.5 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.50 46.0 3.64e-01 99.2% 82.0%
3267388 5076.1.1.0 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier 0.50 40.0 3.03e-01 85.2% 80.6%