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F_protein

Euk-Vir

Perigonia_lusca_single_nucleopolyhedrovirus

F_protein__YP_009165735__Perigonia_lusca_single_nucleopolyhedrovirus__1675865

Identity

Accession:: YP_009165735 ↗
Protein ID:: F_protein
Kingdom:: euk

Quality

69.9 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Perigonia_lusca_single_nucleopolyhedrovirus

TaxID: 1675865

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 26-36_437-515

PDB

Domain cluster: rep: fusion_protein__YP_009117053__Pseudoplusia_includens_SNPV_IE__1592335__D24-36_422-482

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12259.14 best	Baculo_F	73.3	2.40e-20	97.8%	12.6%

D2 medium residues 37-48_334-436_516-567

PDB

Domain cluster: rep: F_protein__YP_009666631__Oxyplax_ochracea_nucleopolyhedrovirus__2083176__D30-53_312-432_486-549

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12259.14 best	Baculo_F	137.1	1.10e-39	63.5%	16.8%
PF12259.14	Baculo_F	48.2	9.60e-13	31.7%	8.5%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1ztmA01	2.40.490.10	Mainly Beta › Beta Barrel › Head and neck region of the ectodomain of NDV fusion glycoprotein › Newcastle disease virus like domain	0.71	44.0	5.36e-01	87.4%	95.4%
1z47A03	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.59	19.0	3.33e-01	72.5%	93.9%
2dixA01	3.30.160.20	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain ›	0.58	25.0	3.40e-01	82.6%	79.5%
1ar0A00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.55	24.0	2.75e-01	92.2%	50.4%
3ec9A00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.54	25.0	2.80e-01	96.4%	51.9%
2k54A00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.53	23.0	2.62e-01	91.6%	50.4%
2chcC00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.51	28.0	2.89e-01	96.4%	53.5%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3407194	5093.1.1.2 ↗	a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Baculo_F	0.79	60.0	4.37e-01	76.6%	99.0%
3599562	292.2.1.0 ↗	a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain	0.57	25.0	3.30e-01	72.5%	74.1%
5082784	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.56	21.0	2.77e-01	92.8%	57.8%
3967332	4.1.1.181 ↗	beta barrels › SH3 › SH3 › SH3 › DUF1820	0.52	23.0	3.16e-01	73.7%	80.0%
5057736	331.3.1.0 ↗	a+b two layers › TBP-like › Bet v1-like › Bet v1-like	0.52	27.0	2.98e-01	95.2%	60.0%
3993048	292.2.1.1 ↗	a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box	0.52	26.0	3.09e-01	71.9%	69.1%

D3 medium residues 49-139_173-272

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12259.14 best	Baculo_F	201.1	4.90e-59	100.0%	34.2%

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2vs0A00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.74	32.0	4.89e-01	94.8%	96.3%
3ctwB00	1.10.8.930	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Protein of unknown function DUF1465	0.68	42.0	5.21e-01	93.2%	96.7%
1r0dA00	1.20.1410.10	Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain	0.67	51.0	5.14e-01	92.7%	78.2%
1x8zB00	1.20.140.40	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein	0.63	41.0	4.71e-01	92.7%	85.7%
1xg2B00	1.20.140.40	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein	0.61	39.0	4.39e-01	90.1%	80.8%
3na7A00	1.10.287.1490	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.59	36.0	3.29e-01	96.9%	48.5%
1nfvA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.59	37.0	3.96e-01	96.9%	70.4%
3i9yA00	1.20.58.920	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.54	41.0	3.90e-01	97.4%	65.9%
2cwlB01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.53	41.0	3.66e-01	89.0%	55.6%
3r2kA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.52	31.0	3.48e-01	92.7%	73.4%
1y4cA03	1.20.120.660	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain	0.51	31.0	3.87e-01	85.9%	100.0%
1sj8A02	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.51	33.0	3.96e-01	84.8%	100.0%
4e40A00	1.20.1260.80	Mainly Alpha › Up-down Bundle › Ferritin ›	0.51	39.0	3.63e-01	80.6%	90.6%

ECOD (32)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3627942	3755.4.1.1 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PI3K_P85_iSH2	0.68	36.0	3.81e-01	97.4%	56.6%
3450858	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.66	28.0	3.43e-01	95.3%	58.5%
4947161	150.1.1.3 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin	0.65	40.0	4.52e-01	90.1%	80.0%
4086322	5086.1.1.205 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PF30209	0.65	33.0	3.59e-01	97.4%	57.0%
3397986	3755.4.1.1 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PI3K_P85_iSH2	0.64	34.0	3.51e-01	97.4%	55.6%
4295514	632.22.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats	0.63	35.0	4.73e-01	76.4%	100.0%
3816971	3755.3.1.285 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NET2A	0.62	39.0	4.15e-01	79.6%	70.6%
3411384	601.1.2.2 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › I_LWEQ	0.58	45.0	4.59e-01	88.0%	80.0%
3352713	633.4.1.1 ↗	alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI	0.58	44.0	4.45e-01	93.7%	79.3%
4019019	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.58	34.0	4.27e-01	73.3%	92.5%
3207621	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.57	39.0	4.43e-01	94.2%	89.9%
4030233	603.1.1.6 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2	0.57	34.0	3.40e-01	97.4%	56.4%
3631867	3755.4.1.55 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › HeLo	0.56	42.0	4.49e-01	92.1%	87.6%
3492486	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.56	51.0	4.80e-01	97.4%	90.9%
3610797	376.1.1.22 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3	0.55	35.0	3.34e-01	97.4%	54.7%
3510392	6157.1.1.1 ↗	alpha bundles › GKAP homology domain 1 › GKAP homology domain 1 › GKAP homology domain 1 › GKAP	0.55	32.0	4.16e-01	74.9%	100.0%
3395441	3755.4.1.0 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain	0.55	43.0	4.69e-01	90.6%	100.0%
4434478	3755.4.1.5 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Dynactin	0.55	46.0	4.81e-01	93.7%	95.6%
3625011	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.54	41.0	4.53e-01	94.8%	97.4%
3488934	6157.1.1.1 ↗	alpha bundles › GKAP homology domain 1 › GKAP homology domain 1 › GKAP homology domain 1 › GKAP	0.54	36.0	4.30e-01	80.1%	100.0%
3655688	3755.3.1.303 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A_4th	0.54	33.0	3.52e-01	97.4%	68.0%
3275771	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.54	39.0	4.00e-01	75.4%	81.6%
4017816	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.54	38.0	4.48e-01	92.7%	100.0%
3460412	3755.4.1.0 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain	0.53	43.0	4.62e-01	94.8%	100.0%
3165689	601.7.1.7 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › NTase_sub_bind	0.53	31.0	3.56e-01	72.8%	75.9%
3220580	150.1.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin	0.53	38.0	4.33e-01	92.1%	100.0%
3833759	3684.1.1.2 ↗	alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › BPS1	0.52	43.0	4.08e-01	90.1%	73.1%
3816910	174.1.1.58 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › NEPRO_N	0.52	44.0	4.46e-01	92.7%	88.9%
3479138	4177.1.1.0 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like	0.52	40.0	3.81e-01	77.5%	87.4%
3471633	3755.3.1.123 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Tektin	0.51	40.0	3.75e-01	80.1%	86.5%
3634865	3567.1.1.0 ↗	a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer	0.50	34.0	3.93e-01	93.7%	91.0%
4261817	5086.1.1.91 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PRM1	0.50	39.0	3.97e-01	83.2%	79.9%

D4 medium residues 273-333

PDB

Domain cluster: rep: envelope_fusion_protein__YP_009552688__Operophtera_brumata_nucleopolyhedrovirus__1046267__D277-336

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12259.14 best	Baculo_F	71.5	8.00e-20	100.0%	9.8%