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F_protein

Euk-Vir

Hyposidra_talaca_nucleopolyhedrovirus

F_protein__YP_010086399__Hyposidra_talaca_nucleopolyhedrovirus__1070315

Identity

Accession:: YP_010086399 ↗
Protein ID:: F_protein
Kingdom:: euk

Quality

70.3 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Hyposidra_talaca_nucleopolyhedrovirus

TaxID: 1070315

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 32-44_427-557

PDB

Domain cluster: rep: efp__YP_004376238__Clostera_anachoreta_granulovirus__283675__D22-47_387-525

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12259.14 best	Baculo_F	149.5	2.10e-43	93.8%	21.3%

D2 medium residues 45-59_325-426

PDB

Domain cluster: rep: envelope_fusion_protein__YP_009345747__Mythimna_unipuncta_granulovirus_B__2169746__D27-50_306-403_477-502

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12259.14 best	Baculo_F	125.0	5.30e-36	88.0%	16.1%

D3 medium residues 60-70_167-203_233-324

PDB

Domain cluster: rep: F_protein__YP_006908522__Epinotia_aporema_granulovirus__166056__D48-94_115-259

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12259.14 best	Baculo_F	118.7	4.20e-34	67.1%	15.1%
PF12259.14	Baculo_F	46.9	2.40e-12	31.4%	6.2%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2di8A01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.74	27.0	3.31e-01	100.0%	50.0%
4ctaA02	3.30.70.2860	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.66	24.0	3.34e-01	100.0%	64.0%
2y8yA01	3.30.70.1200	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 1	0.65	30.0	3.76e-01	98.6%	70.9%
3o4oB03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.63	28.0	3.19e-01	100.0%	54.1%
4k59A00	2.60.40.4380	Mainly Beta › Sandwich › Immunoglobulin-like › Translational regulator CsrA	0.59	26.0	3.58e-01	98.6%	83.3%
2l48A00	3.30.70.2030	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.58	23.0	2.86e-01	100.0%	54.1%
6lcqA00	3.30.30.10	Alpha Beta › 2-Layer Sandwich › Defensin A-like › Knottin, scorpion toxin-like	0.56	23.0	3.30e-01	100.0%	87.0%
2pmbA01	3.30.1850.10	Alpha Beta › 2-Layer Sandwich › MCP/YpsA-like › MoCo carrier protein-like	0.56	32.0	3.56e-01	100.0%	71.0%
3l7wA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	25.0	2.87e-01	98.6%	58.1%
2bolA03	2.60.40.790	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.52	28.0	3.42e-01	100.0%	79.6%
2pofA00	3.30.428.30	Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT family - CDH-like	0.51	36.0	3.17e-01	92.1%	47.3%
2pt7G02	3.30.1370.180	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 ›	0.50	21.0	2.79e-01	77.9%	71.6%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4930013	304.162.1.2 ↗	a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M	0.71	26.0	3.86e-01	100.0%	73.8%
5027191	3012.1.1.0 ↗	a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain	0.71	26.0	3.61e-01	99.3%	65.7%
5066702	310.3.1.0 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related	0.70	26.0	3.50e-01	100.0%	61.3%
5076573	304.43.1.0 ↗	a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725	0.70	26.0	3.50e-01	100.0%	61.3%
5080958	310.3.1.0 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related	0.67	26.0	3.45e-01	99.3%	64.0%
4138721	101.1.9.20 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › PhetRS_B1	0.66	27.0	3.61e-01	100.0%	69.3%
3581967	320.1.1.1 ↗	a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H	0.63	23.0	3.30e-01	100.0%	67.7%
5059035	101.1.2.892 ↗	alpha arrays › HTH › HTH › winged helix domain › ArsR	0.57	23.0	2.87e-01	100.0%	56.7%
3616815	304.28.1.0 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain	0.56	26.0	3.56e-01	100.0%	95.0%
3948220	312.1.1.4 ↗	a+b three layers › HIT-like › HIT-related › HIT-related › CDH	0.56	33.0	3.69e-01	87.9%	74.5%
3892016	256.1.1.0 ↗	a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like	0.54	29.0	2.96e-01	100.0%	50.3%
4928657	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.54	27.0	2.99e-01	100.0%	60.0%
3324359	390.1.1.0 ↗	few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like	0.53	21.0	3.41e-01	100.0%	93.3%
3232527	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.52	26.0	2.97e-01	95.7%	61.9%
5058268	101.1.2.54 ↗	alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R	0.52	23.0	2.55e-01	100.0%	49.6%

D4 medium residues 71-147_204-232

PDB

Domain cluster: rep: F__YP_008378345__Hemileuca_sp._nucleopolyhedrovirus__1367203__D70-147

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12259.14 best	Baculo_F	50.7	1.60e-13	74.5%	12.3%