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F_protein

Euk-Vir

Spodoptera_eridania_nucleopolyhedrovirus

F_protein__YP_010087012__Spodoptera_eridania_nucleopolyhedrovirus__2315721

Identity

Accession:: YP_010087012 ↗
Protein ID:: F_protein
Kingdom:: euk

Quality

69.5 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Spodoptera_eridania_nucleopolyhedrovirus

TaxID: 2315721

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 27-41_334-349_408-554

PDB

Domain cluster: rep: efp__YP_004376238__Clostera_anachoreta_granulovirus__283675__D22-47_387-525

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12259.14 best	Baculo_F	176.5	1.40e-51	83.7%	23.0%

D2 medium residues 42-57_321-333_350-407

PDB

Domain cluster: rep: envelope_fusion_protein__YP_009345747__Mythimna_unipuncta_granulovirus_B__2169746__D27-50_306-403_477-502

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12259.14 best	Baculo_F	77.8	1.00e-21	73.6%	9.2%

D3 medium residues 58-140_165-184_196-233

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12259.14 best	Baculo_F	41.9	7.60e-11	58.9%	12.0%
PF12259.14	Baculo_F	27.9	1.30e-06	44.0%	11.0%

CATH (26)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1fioA00	1.20.58.70	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.71	40.0	3.60e-01	70.2%	41.1%
2fzfA01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.67	46.0	4.54e-01	99.3%	64.7%
3d85C00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.67	40.0	4.13e-01	98.6%	62.4%
4p9fA02	1.20.120.530	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like	0.65	40.0	4.03e-01	95.7%	59.7%
4iloA00	1.10.287.1490	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.65	47.0	3.86e-01	73.0%	98.3%
3ezuA01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.64	51.0	4.66e-01	100.0%	64.3%
3bt5A00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.64	46.0	4.58e-01	100.0%	70.2%
2p5tA00	1.10.8.130	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.62	38.0	4.65e-01	90.8%	93.5%
1lkoA01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.61	42.0	4.19e-01	97.2%	67.6%
1tjoB00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.61	43.0	4.04e-01	100.0%	58.9%
1yo7A00	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.60	43.0	4.71e-01	98.6%	86.7%
2c41C01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.60	46.0	4.52e-01	100.0%	75.2%
2clbA01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.60	46.0	4.44e-01	99.3%	71.1%
6vw7B03	1.20.1440.230	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain	0.59	32.0	4.04e-01	92.2%	88.1%
3m7gA02	1.10.8.1010	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.58	38.0	4.54e-01	89.4%	98.9%
1o5hA00	1.20.120.680	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle	0.57	46.0	4.10e-01	85.1%	87.5%
5y06A01	1.10.287.1490	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.57	40.0	3.39e-01	70.9%	95.6%
2rbdA01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.56	40.0	3.92e-01	98.6%	68.7%
1tj7A01	1.10.275.10	Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain)	0.56	33.0	3.79e-01	98.6%	79.0%
3veaA01	1.20.1270.380	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › MatP, N-terminal domain	0.55	27.0	3.34e-01	90.8%	73.0%
2p61A00	1.20.120.490	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain	0.54	32.0	3.53e-01	85.1%	70.2%
4dylA01	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.54	44.0	3.72e-01	90.1%	84.0%
7akwA01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.53	44.0	3.75e-01	87.9%	97.3%
1rj1A00	1.20.140.40	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein	0.52	48.0	4.70e-01	98.6%	91.2%
3r2kA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.51	44.0	4.29e-01	100.0%	83.1%
4rm7A03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.51	42.0	4.26e-01	97.2%	86.3%

ECOD (28)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3331738	633.4.1.0 ↗	alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor	0.68	42.0	4.93e-01	94.3%	83.8%
5039785	632.22.1.200 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › PF26119	0.63	41.0	4.88e-01	86.5%	98.9%
3456370	192.2.1.0 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin	0.60	43.0	4.16e-01	72.3%	87.7%
4029383	150.1.2.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase	0.60	48.0	3.67e-01	99.3%	38.4%
5047544	3755.4.1.0 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain	0.59	52.0	5.16e-01	99.3%	91.7%
5035107	3922.1.1.358 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PF26119	0.59	46.0	5.14e-01	87.2%	100.0%
3668496	632.1.1.17 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Sas10_Utp3	0.59	37.0	4.39e-01	97.2%	90.0%
3190040	109.4.1.1556 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cohesin_HEAT, PDS5	0.58	38.0	2.34e-01	86.5%	11.3%
4947851	3755.4.1.0 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain	0.56	50.0	4.90e-01	100.0%	90.7%
3742272	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.56	39.0	4.03e-01	99.3%	74.1%
3739409	3285.1.1.0 ↗	alpha duplicates or obligate multimers › Alix V domain › Alix V domain › Alix V domain	0.56	47.0	4.24e-01	90.8%	84.5%
3235853	632.6.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit	0.56	32.0	4.08e-01	95.0%	98.8%
3927223	135.1.1.1 ↗	alpha arrays › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › G-alpha	0.55	40.0	4.30e-01	97.9%	86.7%
3498790	3567.1.1.0 ↗	a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer	0.55	45.0	4.68e-01	86.5%	100.0%
3662019	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.55	45.0	4.54e-01	91.5%	84.1%
3488934	6157.1.1.1 ↗	alpha bundles › GKAP homology domain 1 › GKAP homology domain 1 › GKAP homology domain 1 › GKAP	0.55	47.0	4.94e-01	91.5%	97.7%
3752555	620.1.1.0 ↗	alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases	0.55	40.0	3.96e-01	75.9%	94.0%
3407323	192.29.1.7 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › TMEM192	0.54	43.0	4.22e-01	97.2%	77.3%
3183672	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.53	47.0	4.67e-01	99.3%	90.7%
3731546	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.52	44.0	4.16e-01	93.6%	74.1%
3684255	601.1.2.74 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Rx_N	0.52	44.0	4.50e-01	94.3%	92.9%
3724587	3562.1.1.0 ↗	alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1	0.51	47.0	4.41e-01	98.6%	86.5%
3680096	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.51	41.0	4.25e-01	99.3%	92.5%
3220580	150.1.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin	0.51	42.0	4.30e-01	97.9%	87.9%
3744787	633.22.1.0 ↗	alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR)	0.51	42.0	4.34e-01	97.9%	93.8%
3618419	3615.1.1.0 ↗	alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain	0.51	47.0	4.45e-01	100.0%	87.3%
1304532	633.6.1.1 ↗	alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1	0.51	41.0	4.03e-01	97.9%	78.6%
3401228	150.1.1.102 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › PF31009	0.50	46.0	4.58e-01	97.9%	94.5%

D4 medium residues 185-195_234-320

PDB

Domain cluster: rep: envelope_fusion_protein__YP_009552688__Operophtera_brumata_nucleopolyhedrovirus__1046267__D277-336

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12259.14 best	Baculo_F	125.5	3.60e-36	100.0%	16.1%