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Fascin-like_incomplete_domain_containing_protein

Euk-Vir

Pandoravirus_neocaledonia

Fascin-like_incomplete_domain_containing_protein__YP_009482353__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009482353 ↗
Protein ID:
Fascin-like_incomplete_domain_containing_protein
Kingdom:
euk

Quality

77.9 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

View cluster (82 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 353-471
PDB
Domain cluster: rep: AB012112.1__BAA75082.1__X__00004__D18-146
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06229.19 best FRG1 34.3 2.90e-08 49.6% 28.0%
D2 medium residues 62-83_158-184_240-271_301-312
PDB
Domain cluster: representative
D3 medium residues 84-157
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yhwA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.75 37.0 2.92e-01 75.7% 24.1%
2w40A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.74 41.0 2.79e-01 81.1% 15.7%
3h6eB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.73 39.0 3.52e-01 82.4% 39.4%
3ifrA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.73 40.0 2.74e-01 77.0% 16.4%
1bu6O01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.72 41.0 2.78e-01 78.4% 16.3%
2ap1A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.72 35.0 2.84e-01 73.0% 24.5%
3h1qA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.71 42.0 3.27e-01 87.8% 28.8%
3htvA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.71 36.0 3.09e-01 77.0% 31.5%
1z05A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.68 36.0 2.79e-01 77.0% 24.0%
3ll3B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.68 38.0 2.64e-01 81.1% 16.3%
1bcoA02 2.30.30.130 Mainly Beta › Roll › SH3 type barrels. › Transposase, Mu, C-terminal 0.64 36.0 3.81e-01 81.1% 60.3%
3vskA01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.64 46.0 3.83e-01 77.0% 91.0%
3e29B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 40.0 3.29e-01 86.5% 36.6%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 30.0 3.22e-01 70.3% 50.0%
3dkzA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 39.0 3.30e-01 87.8% 39.2%
4ae7A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 40.0 2.99e-01 86.5% 27.4%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 39.0 3.45e-01 83.8% 46.3%
3gekA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 39.0 3.25e-01 86.5% 38.2%
2wkkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 33.0 2.65e-01 71.6% 26.7%
2fs2B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 40.0 3.24e-01 87.8% 37.0%
3dxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 35.0 3.04e-01 71.6% 37.6%
4bc3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 38.0 2.52e-01 83.8% 16.5%
5tz6B02 3.10.129.120 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.55 42.0 3.31e-01 82.4% 53.9%
1jz7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.71e-01 86.5% 95.7%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 39.0 3.17e-01 75.7% 90.5%
4e19A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 32.0 2.71e-01 94.6% 31.6%
5c71A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.72e-01 82.4% 96.9%
4v19S00 3.30.420.80 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 0.52 38.0 3.04e-01 77.0% 47.6%
2iafA00 3.30.1330.90 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 0.52 42.0 3.43e-01 89.2% 84.3%
2ownA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 42.0 2.90e-01 89.2% 44.9%
1eerC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.76e-01 85.1% 91.8%
3rqbA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.51 41.0 2.84e-01 87.8% 85.2%
6p0wA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 35.0 2.84e-01 70.3% 77.8%
1s5uE00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 40.0 3.30e-01 85.1% 64.0%
3lbeB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 40.0 3.38e-01 85.1% 62.1%
1q6wG00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 38.0 3.06e-01 81.1% 57.7%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4991564 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.77 45.0 3.48e-01 89.2% 27.7%
4518527 2484.1.1.21 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG 0.77 36.0 3.08e-01 71.6% 28.7%
3290713 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.76 40.0 3.07e-01 78.4% 23.7%
1187920 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.76 36.0 3.80e-01 74.3% 49.3%
1873627 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.76 39.0 2.65e-01 79.7% 15.5%
4861390 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.73 40.0 2.73e-01 81.1% 15.1%
5037626 5.1.10.18 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › FG-GAP_3 0.73 39.0 3.74e-01 82.4% 45.9%
3929950 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.72 45.0 3.39e-01 89.2% 27.6%
3929846 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.72 37.0 2.38e-01 70.3% 11.7%
4033690 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.71 35.0 3.05e-01 73.0% 30.9%
1884677 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.71 37.0 3.02e-01 75.7% 28.1%
1149586 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.71 36.0 2.95e-01 77.0% 27.6%
4369763 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.70 41.0 2.75e-01 81.1% 16.2%
3651687 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.70 40.0 2.80e-01 82.4% 18.6%
5013654 5.1.5.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.69 32.0 2.07e-01 70.3% 9.8%
3935434 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.69 40.0 3.29e-01 81.1% 33.1%
5079230 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.68 39.0 3.46e-01 79.7% 39.0%
3351473 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 38.0 3.70e-01 74.3% 50.0%
3814983 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.67 38.0 3.84e-01 74.3% 54.7%
11226 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.67 36.0 2.97e-01 78.4% 29.7%
5057625 5.1.4.43 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.65 37.0 2.26e-01 81.1% 9.2%
5082492 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.63 43.0 4.13e-01 89.2% 61.2%
3281300 4.1.1.426 ↗ beta barrels › SH3 › SH3 › SH3 › PF31188 0.63 38.0 3.98e-01 89.2% 66.2%
5078225 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.63 38.0 4.29e-01 74.3% 77.6%
5070799 5.1.5.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FG-GAP_3 0.61 39.0 2.43e-01 77.0% 10.9%
3354946 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.60 36.0 3.79e-01 75.7% 66.2%
3179767 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 41.0 2.67e-01 83.8% 16.3%
4559658 10.37.1.1 ↗ beta sandwiches › jelly-roll › TerD › TerD › TerD 0.60 48.0 3.46e-01 85.1% 79.3%
3404645 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.60 40.0 2.59e-01 81.1% 16.2%
3546198 5.1.4.149 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WDR54 0.59 36.0 2.29e-01 75.7% 13.2%
4165569 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.58 40.0 3.56e-01 77.0% 52.0%
3957251 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.57 44.0 3.75e-01 82.4% 60.0%
3204490 2485.1.1.30 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Phe_hydrox_dim 0.55 37.0 2.62e-01 70.3% 65.6%
3828337 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.55 33.0 2.84e-01 74.3% 35.0%
5037833 504.1.1.0 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.54 46.0 3.65e-01 91.9% 48.3%
2756654 2484.1.1.11 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L18p 0.53 39.0 3.07e-01 77.0% 47.2%
3352391 2484.1.1.103 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Tab2-like_N 0.52 36.0 3.04e-01 89.2% 40.8%
3279541 10.37.1.1 ↗ beta sandwiches › jelly-roll › TerD › TerD › TerD 0.52 43.0 3.47e-01 89.2% 80.0%
3266113 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.52 43.0 2.79e-01 89.2% 28.8%
3414375 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 32.0 2.73e-01 87.8% 35.9%
3271756 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 33.0 2.57e-01 78.4% 27.4%
4948119 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.51 42.0 3.59e-01 89.2% 82.5%
3249434 11.2.1.8 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.51 41.0 3.44e-01 86.5% 56.8%
3238362 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 30.0 2.03e-01 70.3% 13.2%
3341735 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.51 34.0 2.58e-01 91.9% 25.5%
D4 medium residues 185-239_272-300
PDB
Domain cluster: representative