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Filtrate_w_scaffold_1_prodigal-single.1__X__X__00010

Bact-Vir

Filtrate_w_scaffold_1_prodigal-single.1__X__X__00010

Identity

Kingdom:
phage

Quality

72.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-73
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.86 76.0 6.76e-01 98.3% 73.2%
3ne5B04 6.10.140.730 Special › Helix non-globular › Helix Hairpins › 0.76 58.0 6.07e-01 94.8% 94.1%
1vw4T02 6.10.140.1190 Special › Helix non-globular › Helix Hairpins › 0.74 59.0 6.24e-01 98.3% 100.0%
1yozA00 1.10.3200.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like 0.73 62.0 5.11e-01 100.0% 70.8%
1wkbA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.72 63.0 4.96e-01 98.3% 59.5%
2vkjA00 1.20.58.2030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 49.0 4.05e-01 100.0% 39.6%
2e9fB01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.71 49.0 4.16e-01 72.4% 45.8%
2p67A01 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.68 51.0 5.34e-01 93.1% 90.4%
5dn6J00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.68 49.0 4.58e-01 77.6% 68.9%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.68 59.0 4.19e-01 98.3% 93.3%
5dikA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.68 54.0 4.48e-01 94.8% 47.3%
1jalA03 1.10.150.300 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain 0.68 47.0 4.28e-01 100.0% 53.1%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 46.0 4.25e-01 87.9% 55.3%
3zdmB00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.67 50.0 5.27e-01 91.4% 96.0%
6gc1A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.66 58.0 4.04e-01 100.0% 91.1%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.66 53.0 5.34e-01 98.3% 96.5%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.65 46.0 4.11e-01 77.6% 51.8%
2e8gA01 1.20.1440.150 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.65 57.0 4.44e-01 96.6% 74.2%
4fymF00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 56.0 3.88e-01 100.0% 37.3%
1ku9A02 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.65 46.0 4.47e-01 81.0% 68.8%
5xdcB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.64 53.0 4.44e-01 100.0% 51.4%
4asvA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.64 48.0 4.40e-01 91.4% 60.8%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.64 53.0 4.79e-01 100.0% 88.5%
2vklA00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.64 55.0 5.02e-01 98.3% 75.3%
1n69B00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.63 43.0 3.97e-01 72.4% 62.5%
2lhrA00 1.20.58.1270 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 48.0 4.41e-01 100.0% 62.8%
5mv9A01 1.25.40.530 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain 0.62 56.0 3.93e-01 100.0% 33.0%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.62 42.0 4.11e-01 74.1% 62.7%
2d2sA01 1.20.58.1210 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain 0.62 51.0 4.26e-01 100.0% 53.4%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 49.0 4.16e-01 91.4% 84.2%
2i6hA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 43.0 3.78e-01 91.4% 46.9%
1bbhA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.61 48.0 3.77e-01 89.7% 74.8%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.60 50.0 4.35e-01 98.3% 84.7%
4nqwB00 1.10.10.1320 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Anti-sigma factor, zinc-finger domain 0.60 44.0 4.17e-01 96.6% 64.4%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 49.0 4.78e-01 91.4% 84.1%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.58 44.0 4.28e-01 84.5% 73.4%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.58 44.0 3.62e-01 89.7% 53.2%
4zqeA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.57 42.0 3.54e-01 77.6% 46.9%
3c8tA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.57 51.0 4.28e-01 100.0% 72.2%
2r5sA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 43.0 3.94e-01 98.3% 60.2%
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.56 47.0 3.92e-01 94.8% 53.3%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.56 38.0 3.84e-01 82.8% 72.4%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.53 42.0 3.86e-01 87.9% 93.7%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 42.0 3.69e-01 100.0% 97.2%
1vfiA00 1.10.246.100 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Vanadium-binding protein 2 0.52 37.0 3.30e-01 81.0% 48.4%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.50 42.0 3.84e-01 96.6% 96.3%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2096499 3273.1.1.2 alpha arrays › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins › MCP_C 0.86 76.0 6.76e-01 98.3% 73.2%
4954945 4095.1.1.1 alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.80 61.0 5.26e-01 93.1% 53.3%
3817728 3860.1.1.257 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › Ovate 0.80 69.0 5.82e-01 100.0% 58.9%
3303808 605.8.1.4 alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like › Ovate 0.79 67.0 6.82e-01 98.3% 100.0%
3673670 639.2.1.4 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › Ovate 0.78 68.0 6.60e-01 100.0% 87.7%
3646179 4030.1.1.20 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › Ovate 0.78 65.0 6.71e-01 98.3% 100.0%
3346039 101.35.1.23 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate 0.77 63.0 6.50e-01 94.8% 100.0%
3825757 101.35.1.23 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate 0.76 67.0 6.51e-01 100.0% 89.2%
5045531 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.74 66.0 5.82e-01 100.0% 82.4%
3292409 101.35.1.23 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate 0.73 62.0 6.15e-01 98.3% 93.3%
3407923 192.24.1.1 alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain › RPC3_helical 0.73 55.0 4.53e-01 89.7% 46.0%
3868 4204.1.1.1 alpha bundles › AF0941-like › AF0941-like › AF0941-like › AF0941-like 0.73 62.0 5.14e-01 100.0% 72.1%
3274722 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.73 63.0 5.74e-01 100.0% 73.8%
3909538 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.72 65.0 5.29e-01 100.0% 84.6%
5021069 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.71 57.0 4.76e-01 98.3% 50.0%
3225048 3198.1.1.1 alpha bundles › ABA-1 repeat unit › ABA-1 repeat unit › ABA-1 repeat unit › NPA 0.71 63.0 4.88e-01 98.3% 45.6%
5079025 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.69 48.0 4.53e-01 72.4% 62.9%
3309055 159.1.2.1 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PRA-PH 0.69 46.0 4.56e-01 84.5% 66.7%
4577138 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.68 52.0 4.45e-01 98.3% 48.6%
2462402 2004.1.3.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.68 59.0 4.08e-01 98.3% 84.3%
3174559 4030.1.1.2 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › F-actin_cap_A 0.67 48.0 5.19e-01 98.3% 100.0%
3372218 109.27.1.3 alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › NPH3 0.67 53.0 5.08e-01 93.1% 74.3%
4888664 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 54.0 5.50e-01 98.3% 100.0%
5016654 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.67 45.0 4.39e-01 77.6% 63.1%
3840404 101.7.1.1 alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.67 58.0 5.77e-01 98.3% 95.0%
3764771 101.1.2.365 alpha arrays › HTH › HTH › winged helix domain › DEK_C 0.65 55.0 5.61e-01 94.8% 100.0%
3474421 101.1.2.365 alpha arrays › HTH › HTH › winged helix domain › DEK_C 0.65 57.0 5.38e-01 100.0% 82.9%
5058628 632.18.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 0.65 44.0 4.18e-01 77.6% 58.6%
5054075 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.64 44.0 4.43e-01 74.1% 70.0%
4286197 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.64 48.0 4.36e-01 82.8% 90.0%
5060141 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.64 47.0 4.46e-01 79.3% 71.0%
3702372 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 51.0 3.38e-01 93.1% 21.9%
4978829 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.63 47.0 4.46e-01 79.3% 68.6%
1503553 3796.1.1.1 alpha arrays › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › Isd_H_B_linker 0.63 48.0 4.41e-01 100.0% 62.8%
4981748 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.63 47.0 4.31e-01 79.3% 61.3%
5059275 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.63 49.0 4.87e-01 84.5% 81.7%
3932644 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.63 43.0 3.90e-01 74.1% 58.8%
5060848 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.63 42.0 4.21e-01 77.6% 68.3%
4099504 604.17.1.0 alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like 0.62 51.0 5.14e-01 98.3% 93.3%
4981745 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.62 42.0 3.97e-01 75.9% 56.0%
3410327 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 53.0 4.64e-01 100.0% 64.4%
4009124 639.2.1.5 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › PF27475 0.61 52.0 5.16e-01 96.6% 100.0%
4467849 109.4.1.3080 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29795 0.60 50.0 3.96e-01 100.0% 45.2%
3658567 164.1.1.0 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II 0.60 48.0 4.64e-01 100.0% 80.0%
4029483 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.60 51.0 3.90e-01 100.0% 49.0%
3782673 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.60 52.0 4.21e-01 100.0% 80.0%
3482901 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.59 41.0 3.73e-01 72.4% 58.7%
3935032 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.58 49.0 4.16e-01 100.0% 86.7%
5028356 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.57 47.0 3.68e-01 91.4% 81.6%
3644352 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 46.0 3.81e-01 100.0% 68.8%
3941250 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 47.0 4.00e-01 100.0% 85.5%
3943035 639.2.1.0 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.57 47.0 4.65e-01 100.0% 92.3%
3514683 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 46.0 3.84e-01 98.3% 85.5%
4606780 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.54 38.0 3.82e-01 74.1% 80.0%
5046413 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.52 44.0 4.50e-01 91.4% 96.4%
5062157 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.51 43.0 4.05e-01 91.4% 75.7%