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Filtrate_w_scaffold_1_prodigal-single.1__X__X__00114
Bact-VirFiltrate_w_scaffold_1_prodigal-single.1__X__X__00114
Identity
- Kingdom:
- phage
Quality
55.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-130
D2
high
residues 137-221
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4953755_prodigal-single.1__X__X__00022__D2-90
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xi9B01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 44.0 | 4.06e-01 | 100.0% | 54.2% |
| 6rptC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 49.0 | 4.50e-01 | 94.1% | 64.3% |
| 2fauA01 | 2.60.40.640 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 51.0 | 4.28e-01 | 92.9% | 57.6% |
| 2x5pA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 43.0 | 4.07e-01 | 100.0% | 60.6% |
| 2atzA00 | 3.90.920.20 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like | 0.59 | 42.0 | 3.34e-01 | 74.1% | 96.6% |
| 5eo9B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 44.0 | 4.28e-01 | 95.3% | 70.5% |
| 3licA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 41.0 | 3.27e-01 | 75.3% | 63.5% |
| 2rijA01 | 3.30.70.2010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 42.0 | 3.49e-01 | 80.0% | 82.5% |
| 3eaaA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.55 | 50.0 | 4.02e-01 | 100.0% | 80.9% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.55 | 38.0 | 4.03e-01 | 77.6% | 81.6% |
| 1wscA01 | 3.30.700.20 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1 | 0.55 | 47.0 | 3.96e-01 | 100.0% | 55.0% |
| 3n6yA01 | 2.60.40.2390 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 43.0 | 3.94e-01 | 94.1% | 64.3% |
| 1vwxS01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.55 | 38.0 | 4.11e-01 | 76.5% | 88.7% |
| 4i86A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.53 | 41.0 | 3.94e-01 | 98.8% | 71.6% |
| 1loxA02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.53 | 42.0 | 3.95e-01 | 100.0% | 69.4% |
| 5abxA00 | 3.30.760.10 | Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e | 0.52 | 47.0 | 3.73e-01 | 100.0% | 69.4% |
| 5da9A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 46.0 | 3.09e-01 | 100.0% | 32.0% |
| 3wnzA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.52 | 45.0 | 3.78e-01 | 96.5% | 70.1% |
| 4hwxA00 | 3.30.350.10 | Alpha Beta › 2-Layer Sandwich › Subtilisin Inhibitor › Subtilisin inhibitor-like | 0.52 | 45.0 | 4.13e-01 | 97.6% | 87.7% |
| 1n9pA00 | 2.60.40.1400 | Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 | 0.51 | 45.0 | 3.47e-01 | 98.8% | 62.4% |
| 1nbuA00 | 3.30.1130.10 | Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain | 0.51 | 42.0 | 3.86e-01 | 92.9% | 78.8% |
| 2b9lA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 43.0 | 3.65e-01 | 100.0% | 57.3% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.51 | 41.0 | 3.41e-01 | 92.9% | 96.4% |
| 3npfA03 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.50 | 37.0 | 3.11e-01 | 89.4% | 42.9% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4032409 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 54.0 | 5.76e-01 | 85.9% | 97.3% |
| 3998831 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.67 | 41.0 | 2.90e-01 | 100.0% | 22.1% |
| 1005462 | 11.1.4.36 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SpaA | 0.65 | 46.0 | 4.38e-01 | 100.0% | 64.3% |
| 3788475 | 11.1.1.626 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Bul1_N | 0.62 | 53.0 | 3.88e-01 | 92.9% | 68.0% |
| 3912609 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.62 | 56.0 | 4.69e-01 | 100.0% | 64.8% |
| 5016503 | 77.1.1.0 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein | 0.60 | 51.0 | 4.77e-01 | 100.0% | 75.5% |
| 3839169 | 2003.1.1.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP | 0.60 | 47.0 | 3.48e-01 | 85.9% | 71.3% |
| 139131 | 223.1.1.51 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 | 0.58 | 41.0 | 3.27e-01 | 75.3% | 63.8% |
| 4981567 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.57 | 41.0 | 3.68e-01 | 77.6% | 63.2% |
| 3288524 | 3844.2.1.1 ↗ | a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG | 0.56 | 51.0 | 3.69e-01 | 100.0% | 56.5% |
| 3466416 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.56 | 48.0 | 3.71e-01 | 100.0% | 41.4% |
| 3772155 | 73.1.1.6 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 | 0.56 | 48.0 | 3.53e-01 | 95.3% | 38.2% |
| 4981873 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.55 | 48.0 | 3.67e-01 | 100.0% | 57.1% |
| 3287652 | 3844.2.1.1 ↗ | a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG | 0.55 | 48.0 | 3.43e-01 | 100.0% | 55.9% |
| 4997361 | 246.1.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase | 0.55 | 44.0 | 3.12e-01 | 89.4% | 82.0% |
| 3972650 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.55 | 45.0 | 4.12e-01 | 89.4% | 100.0% |
| 5053264 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.54 | 47.0 | 3.80e-01 | 100.0% | 65.1% |
| 3667441 | 10.10.1.0 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) | 0.54 | 47.0 | 4.15e-01 | 100.0% | 96.9% |
| 3690970 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 43.0 | 2.99e-01 | 89.4% | 75.8% |
| 3576926 | 73.1.1.0 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain | 0.53 | 45.0 | 4.32e-01 | 95.3% | 79.0% |
| 3490466 | 73.1.1.6 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 | 0.53 | 44.0 | 3.85e-01 | 92.9% | 61.5% |
| 5047048 | 246.2.1.9 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 | 0.53 | 38.0 | 2.97e-01 | 75.3% | 100.0% |
| 3455988 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 48.0 | 3.99e-01 | 100.0% | 67.6% |
| 3407680 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.53 | 46.0 | 3.31e-01 | 100.0% | 39.2% |
| 4026305 | 1.1.5.36 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_ox_like | 0.53 | 46.0 | 3.62e-01 | 100.0% | 72.6% |
| 3894643 | 234.1.1.0 ↗ | a+b two layers › Microbial ribonucleases-like › Microbial ribonucleases › Microbial ribonucleases | 0.52 | 43.0 | 3.44e-01 | 91.8% | 73.5% |
| 3289401 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.52 | 47.0 | 4.05e-01 | 100.0% | 76.2% |
| 5079248 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.50 | 42.0 | 3.06e-01 | 97.6% | 60.4% |
| 3899206 | 73.1.1.6 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 | 0.50 | 42.0 | 3.25e-01 | 95.3% | 40.5% |