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Filtrate_w_scaffold_1_prodigal-single.1__X__X__00200

Bact-Vir

Filtrate_w_scaffold_1_prodigal-single.1__X__X__00200

Identity

Kingdom:
phage

Quality

88.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-61
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dmwA01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.69 51.0 4.08e-01 86.7% 40.5%
4uoiC00 3.30.160.890 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C 0.69 36.0 3.85e-01 86.7% 54.9%
1h8mA00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.68 51.0 3.84e-01 80.0% 59.3%
3devA02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.68 60.0 4.84e-01 100.0% 74.1%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.66 57.0 4.87e-01 100.0% 89.0%
6h5bB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.66 50.0 4.04e-01 83.3% 52.1%
1h9oA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 56.0 4.69e-01 100.0% 89.8%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.64 50.0 4.06e-01 85.0% 53.5%
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.64 50.0 5.16e-01 86.7% 96.4%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.64 41.0 3.97e-01 73.3% 58.2%
2zvfA02 3.10.310.40 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.64 56.0 4.68e-01 100.0% 81.1%
5kolD00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.64 56.0 4.06e-01 100.0% 76.2%
2p4bB02 3.30.200.100 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain 0.64 44.0 3.81e-01 73.3% 64.3%
2cs0A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.63 55.0 4.76e-01 100.0% 93.7%
2ea9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 47.0 4.07e-01 80.0% 52.1%
6frlA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 56.0 3.29e-01 100.0% 54.2%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.62 44.0 4.23e-01 75.0% 78.3%
2xdoD00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 53.0 3.30e-01 96.7% 62.9%
1skoA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.62 48.0 3.84e-01 85.0% 44.5%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.61 47.0 3.81e-01 85.0% 52.9%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 52.0 4.31e-01 100.0% 76.3%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.61 39.0 3.19e-01 90.0% 33.3%
3nvoA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.60 41.0 3.19e-01 71.7% 32.1%
1y4oA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.60 42.0 3.54e-01 75.0% 51.0%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.59 41.0 3.49e-01 73.3% 83.0%
3e1tA02 3.30.9.100 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › 0.59 47.0 3.42e-01 86.7% 49.4%
5nahA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 50.0 3.11e-01 98.3% 65.0%
8adnN01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.59 50.0 3.60e-01 100.0% 66.5%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 45.0 3.39e-01 88.3% 34.8%
3i3lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 51.0 3.09e-01 98.3% 54.6%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 41.0 3.21e-01 86.7% 34.6%
2gk4A00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.58 49.0 3.40e-01 100.0% 28.4%
1ym5A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.58 48.0 3.83e-01 98.3% 72.8%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.56 43.0 3.52e-01 85.0% 46.7%
6hgcA01 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.55 46.0 3.33e-01 98.3% 74.9%
1bbuA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 42.0 3.29e-01 86.7% 75.0%
3s1sA01 3.90.1570.30 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.54 45.0 3.43e-01 100.0% 59.2%
3kljA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.54 38.0 3.54e-01 78.3% 97.6%
4ii2A02 3.40.50.12550 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 2 0.54 43.0 3.06e-01 95.0% 80.6%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 43.0 3.27e-01 86.7% 39.0%
2e4qA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.53 43.0 3.62e-01 91.7% 63.9%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 43.0 3.06e-01 86.7% 33.3%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 46.0 3.58e-01 98.3% 77.9%
3v7dD02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 2.81e-01 98.3% 30.5%
2a0aA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 44.0 3.47e-01 96.7% 77.9%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.52 34.0 2.81e-01 70.0% 37.6%
6l4lA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 41.0 3.34e-01 96.7% 49.3%
1e8cA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.51 40.0 2.73e-01 100.0% 22.3%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 45.0 3.45e-01 98.3% 77.0%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 43.0 3.37e-01 98.3% 83.6%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5078530 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.73 53.0 4.42e-01 85.0% 44.8%
185643 223.2.1.11 a+b three layers › Profilin-like › profilin-like › profilin-like › AP3D1,Longin 0.71 52.0 3.81e-01 86.7% 29.7%
5071765 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.71 56.0 4.38e-01 90.0% 40.8%
5074857 223.2.1.59 a+b three layers › Profilin-like › profilin-like › profilin-like › Roc 0.71 53.0 3.31e-01 85.0% 15.5%
3704885 3100.1.1.0 extended segments › Synaptobrevin › Synaptobrevin › Synaptobrevin 0.70 53.0 3.62e-01 91.7% 23.3%
4947581 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 50.0 4.11e-01 85.0% 41.8%
5046979 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 53.0 4.35e-01 91.7% 45.5%
3808328 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 51.0 4.02e-01 86.7% 38.4%
3728783 223.2.1.15 a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.69 53.0 4.04e-01 91.7% 35.7%
4027694 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.68 37.0 4.13e-01 86.7% 68.9%
4034138 7520.1.1.0 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.68 60.0 4.65e-01 100.0% 79.7%
3476370 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 51.0 3.84e-01 85.0% 33.8%
5076068 223.2.1.3 a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.67 52.0 4.34e-01 85.0% 48.6%
5051015 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 54.0 3.92e-01 86.7% 36.1%
4944643 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 52.0 4.14e-01 90.0% 41.7%
3387446 7579.1.1.60 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF2920 0.66 45.0 2.73e-01 71.7% 60.5%
5077119 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 52.0 3.88e-01 85.0% 36.7%
None 0.66 50.0 3.84e-01 86.7% 35.5%
4944411 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 52.0 4.03e-01 86.7% 38.5%
5077444 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 50.0 3.86e-01 86.7% 37.0%
4977806 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 50.0 3.95e-01 85.0% 39.2%
3507450 223.2.1.12 a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.65 51.0 3.99e-01 85.0% 42.4%
3477283 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.65 56.0 4.81e-01 100.0% 92.0%
5074455 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 51.0 4.16e-01 91.7% 46.4%
3397916 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.65 54.0 2.99e-01 93.3% 61.8%
5072371 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 51.0 4.33e-01 91.7% 52.0%
5064298 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.65 50.0 4.09e-01 85.0% 51.3%
4945318 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 52.0 4.19e-01 91.7% 46.1%
3479721 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.65 55.0 4.64e-01 100.0% 89.0%
3882038 223.2.1.3 a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.64 47.0 3.49e-01 91.7% 30.3%
3935139 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.64 55.0 4.25e-01 100.0% 64.1%
5051614 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 50.0 3.93e-01 86.7% 40.8%
5044629 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 50.0 4.08e-01 86.7% 47.0%
5071984 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 49.0 3.78e-01 85.0% 45.7%
3854670 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.63 54.0 4.23e-01 100.0% 63.6%
3403732 2484.1.1.145 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.63 51.0 3.19e-01 90.0% 18.0%
4946587 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 49.0 3.88e-01 86.7% 40.8%
4976967 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 50.0 3.82e-01 88.3% 41.3%
3935342 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.63 54.0 4.43e-01 100.0% 80.0%
3491036 223.2.1.16 a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.63 43.0 3.77e-01 71.7% 51.7%
3166028 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 49.0 4.18e-01 88.3% 53.7%
4998686 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 49.0 3.69e-01 86.7% 38.0%
4929084 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 44.0 2.65e-01 75.0% 100.0%
3227340 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.62 53.0 4.04e-01 100.0% 61.3%
4025792 223.2.1.3 a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.61 48.0 3.58e-01 91.7% 32.7%
5072327 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 48.0 3.73e-01 86.7% 41.5%
5074128 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.61 46.0 4.49e-01 80.0% 92.3%
3735734 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.61 48.0 3.85e-01 86.7% 56.7%
3623273 101.1.2.712 alpha arrays › HTH › HTH › winged helix domain › FNIP_C 0.61 53.0 3.48e-01 100.0% 69.5%
3723542 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 47.0 3.79e-01 86.7% 50.4%
4997139 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 47.0 3.66e-01 91.7% 38.5%
4944860 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 48.0 3.71e-01 90.0% 40.0%
3480221 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.59 39.0 3.86e-01 78.3% 63.1%
5012791 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 50.0 3.84e-01 100.0% 54.0%
3726185 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.59 48.0 3.60e-01 90.0% 82.7%
5053041 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 46.0 3.59e-01 86.7% 41.5%
3180688 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.59 46.0 3.71e-01 86.7% 56.7%
3696165 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.58 45.0 3.61e-01 86.7% 59.2%
3183316 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.58 47.0 3.47e-01 91.7% 78.8%
4088743 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.57 44.0 4.41e-01 85.0% 95.0%
4959499 2003.1.2.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.57 39.0 3.38e-01 73.3% 51.0%
3722342 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.56 47.0 2.91e-01 96.7% 62.6%
4989913 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 41.0 2.73e-01 80.0% 24.2%
4555099 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.55 41.0 4.25e-01 81.7% 100.0%
4527067 206.1.3.40 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_YheCD 0.55 45.0 3.03e-01 93.3% 48.6%
3232262 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.55 46.0 3.91e-01 100.0% 69.1%
3415072 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.53 48.0 3.59e-01 98.3% 73.6%
3928377 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.53 44.0 3.19e-01 96.7% 43.9%
5004521 4317.1.1.0 a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like 0.53 40.0 4.05e-01 80.0% 81.7%
3495597 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 46.0 3.11e-01 100.0% 44.4%
3967702 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.51 38.0 3.12e-01 83.3% 52.8%
3487462 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 44.0 3.48e-01 98.3% 79.2%
4985409 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.50 40.0 3.16e-01 98.3% 99.4%