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Filtrate_w_scaffold_1_prodigal-single.1__X__X__00279

Bact-Vir

Filtrate_w_scaffold_1_prodigal-single.1__X__X__00279

Identity

Kingdom:
phage

Quality

87.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-101
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4by2B00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.74 45.0 3.82e-01 76.0% 39.4%
4ld1A00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.73 45.0 3.79e-01 77.0% 38.9%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.73 54.0 5.01e-01 100.0% 61.9%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.70 53.0 5.00e-01 100.0% 66.9%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.66 53.0 4.80e-01 87.0% 82.4%
3b8bA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.65 47.0 4.02e-01 76.0% 69.8%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.63 50.0 4.55e-01 87.0% 95.0%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.63 41.0 4.51e-01 78.0% 82.5%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.62 49.0 4.67e-01 86.0% 100.0%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.61 43.0 3.51e-01 100.0% 39.9%
3g3oA00 3.20.100.30 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › VTC, catalytic tunnel domain 0.60 49.0 3.55e-01 88.0% 58.0%
1ry9A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 44.0 4.08e-01 79.0% 85.0%
3actA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.59 44.0 3.15e-01 78.0% 85.8%
1dkiC01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.58 39.0 3.20e-01 70.0% 85.6%
2erfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 52.0 4.09e-01 100.0% 72.2%
2ymsA00 2.40.128.630 Mainly Beta › Beta Barrel › Lipocalin › 0.57 40.0 3.80e-01 74.0% 90.3%
3gvzA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.57 50.0 3.79e-01 100.0% 71.1%
2o30A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 29.0 3.25e-01 97.0% 61.0%
2zgoA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 50.0 4.25e-01 100.0% 82.6%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 43.0 3.55e-01 100.0% 46.6%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 4.52e-01 88.0% 93.3%
5tkwA02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.55 35.0 4.20e-01 83.0% 98.5%
2uurA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 49.0 3.89e-01 100.0% 68.6%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 48.0 3.42e-01 100.0% 70.8%
2jmbA00 2.40.128.290 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein family Atu4866 0.55 38.0 4.25e-01 82.0% 92.4%
1avaA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 30.0 3.76e-01 74.0% 91.4%
2r0hA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 49.0 4.19e-01 100.0% 88.1%
6m90A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 48.0 3.48e-01 100.0% 63.4%
4g7nA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 49.0 4.61e-01 100.0% 81.8%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 4.49e-01 87.0% 93.5%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 48.0 4.33e-01 100.0% 92.8%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 48.0 3.35e-01 100.0% 72.1%
2wkkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 48.0 4.21e-01 100.0% 85.3%
1914A00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.53 44.0 3.68e-01 89.0% 94.7%
2x1cB01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.53 48.0 3.47e-01 100.0% 94.3%
2w18A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 46.0 3.26e-01 95.0% 48.0%
3v8uA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.53 41.0 3.44e-01 84.0% 92.2%
6igbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 47.0 3.25e-01 100.0% 71.1%
3vv1A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 4.19e-01 100.0% 86.5%
1xipA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 47.0 3.21e-01 100.0% 46.6%
4zovB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 47.0 3.19e-01 100.0% 64.6%
6fcvB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 46.0 3.12e-01 99.0% 56.7%
2ovrB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 45.0 3.20e-01 100.0% 60.2%
3w9aA00 2.60.120.1160 Mainly Beta › Sandwich › Jelly Rolls › 0.51 45.0 3.44e-01 99.0% 59.9%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.51 30.0 3.44e-01 80.0% 85.1%
4bpxD00 1.20.930.80 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.51 40.0 3.23e-01 88.0% 92.5%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 39.0 3.81e-01 83.0% 76.9%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3600232 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.77 55.0 4.32e-01 100.0% 37.0%
3177260 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.74 58.0 4.33e-01 100.0% 34.9%
3242234 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.73 54.0 3.36e-01 100.0% 14.8%
3246494 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.73 52.0 3.90e-01 100.0% 30.6%
4609923 77.3.1.4 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 0.73 46.0 4.12e-01 76.0% 47.4%
3993048 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.72 54.0 5.27e-01 100.0% 70.9%
3931562 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.72 54.0 4.10e-01 100.0% 34.7%
3700776 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.72 45.0 5.34e-01 95.0% 91.4%
3231343 77.1.1.10 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › PF28998 0.72 44.0 4.05e-01 77.0% 47.7%
3619159 292.2.1.5 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Polo_box_3 0.71 46.0 4.73e-01 100.0% 68.4%
3536576 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.71 53.0 5.67e-01 100.0% 90.6%
3741285 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.71 53.0 5.47e-01 100.0% 82.1%
3546306 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.71 54.0 5.51e-01 100.0% 83.2%
4797890 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.70 52.0 5.58e-01 100.0% 91.8%
3585414 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.66 51.0 4.98e-01 95.0% 74.5%
1174175 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.65 47.0 4.02e-01 75.0% 69.8%
4003932 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.65 50.0 4.71e-01 92.0% 68.3%
3273196 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.65 46.0 4.03e-01 74.0% 51.3%
3256681 77.3.1.0 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.64 42.0 2.87e-01 80.0% 18.6%
3474473 77.3.1.0 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.64 43.0 3.49e-01 77.0% 37.8%
3599562 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.63 41.0 4.39e-01 96.0% 76.5%
6667 4221.1.1.1 a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › DUF1797 0.62 41.0 4.54e-01 78.0% 84.6%
3273142 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.62 41.0 2.89e-01 79.0% 21.9%
3947013 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.62 40.0 4.28e-01 97.0% 73.3%
5792 295.1.1.6 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 0.62 50.0 4.71e-01 87.0% 100.0%
3927439 5.1.3.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.61 44.0 3.69e-01 75.0% 91.4%
3600915 77.3.1.0 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.61 56.0 3.76e-01 100.0% 96.0%
3935619 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 49.0 3.14e-01 85.0% 87.7%
4971345 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 38.0 3.81e-01 74.0% 62.0%
4600292 10.1.1.35 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.60 51.0 4.05e-01 94.0% 72.2%
3267885 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.59 43.0 3.92e-01 78.0% 56.3%
3534125 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 53.0 4.09e-01 99.0% 64.0%
3872625 11.1.1.787 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ITI_HC_C 0.58 54.0 3.98e-01 100.0% 50.0%
3541447 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 49.0 4.00e-01 91.0% 85.6%
3962319 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.57 40.0 3.49e-01 73.0% 67.3%
3748155 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.56 51.0 4.06e-01 100.0% 70.5%
3279474 241.11.1.1 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.56 43.0 4.17e-01 82.0% 81.7%
3755672 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.55 49.0 3.86e-01 100.0% 48.0%
3419526 5.1.5.146 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_AT5G49610-like 0.55 46.0 3.20e-01 92.0% 48.5%
4961285 331.3.1.2 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Ring_hydroxyl_A 0.54 47.0 3.82e-01 99.0% 73.5%
3886019 6129.1.1.11 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › ITI_HC_C 0.54 49.0 3.76e-01 100.0% 54.0%
3790115 5.1.4.341 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_2nd 0.54 47.0 3.15e-01 95.0% 72.1%
3233897 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 45.0 4.22e-01 94.0% 74.2%
3219284 2484.1.1.190 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 0.54 45.0 3.30e-01 95.0% 34.0%
3578425 5.1.4.21 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.54 46.0 3.13e-01 95.0% 66.5%
3643787 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.54 48.0 3.30e-01 100.0% 81.7%
3996624 5.1.5.164 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_IFT140_1st, Beta-prop_IFT140_2nd 0.53 47.0 3.22e-01 99.0% 45.1%
3517889 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.53 38.0 3.79e-01 94.0% 71.2%
3224579 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 41.0 2.94e-01 94.0% 26.8%
3597997 63.1.1.0 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.53 44.0 3.93e-01 88.0% 83.7%
3463667 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.53 44.0 3.13e-01 92.0% 97.9%
3185947 5.1.4.271 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.53 47.0 3.01e-01 100.0% 98.0%
3485655 5.1.4.528 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_IFT80_2nd 0.52 45.0 3.14e-01 99.0% 50.1%
3594587 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 46.0 3.06e-01 100.0% 53.1%
3224940 5.1.5.105 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_IFT140_1st 0.52 46.0 3.11e-01 99.0% 68.6%
3989353 9.9.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.52 45.0 4.23e-01 98.0% 100.0%
3199036 63.1.1.4 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH_1 0.52 41.0 3.78e-01 87.0% 84.4%
3639842 5.1.4.321 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30361 0.52 46.0 2.97e-01 100.0% 98.4%
3793856 5.1.4.421 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_1st, Beta-prop_IFT140_2nd 0.51 45.0 2.72e-01 99.0% 20.8%
3246345 5.1.4.341 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_2nd 0.51 41.0 2.93e-01 87.0% 40.3%
4001295 5.1.4.21 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.51 46.0 3.14e-01 100.0% 56.7%
4428983 5.1.4.321 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30361 0.51 45.0 2.97e-01 100.0% 73.7%
3821141 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.51 45.0 3.28e-01 100.0% 80.3%
3280585 241.11.1.1 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.51 41.0 4.05e-01 88.0% 89.1%
3273903 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.50 44.0 3.08e-01 99.0% 55.4%
4000493 6129.1.1.9 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › RGM_C 0.50 45.0 3.70e-01 97.0% 81.1%