←Back to structures
Filtrate_w_scaffold_1_prodigal-single.1__X__X__00340
Bact-VirFiltrate_w_scaffold_1_prodigal-single.1__X__X__00340
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-64
Domain cluster:
rep: JX238501.3__AGB62643.1__X__00197__D3-67
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ga8A00 | 3.10.20.860 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.71 | 60.0 | 5.54e-01 | 100.0% | 77.6% |
| 2w01B00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.68 | 56.0 | 3.85e-01 | 100.0% | 72.1% |
| 4aqlA01 | 2.30.40.10 | Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 | 0.68 | 48.0 | 3.61e-01 | 82.0% | 29.8% |
| 1vw3C01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.66 | 52.0 | 3.93e-01 | 96.0% | 34.4% |
| 1vw4F01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.61 | 48.0 | 4.03e-01 | 92.0% | 62.4% |
| 2drpA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.60 | 34.0 | 3.85e-01 | 94.0% | 76.5% |
| 4cj0A02 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.60 | 47.0 | 2.88e-01 | 100.0% | 26.0% |
| 4ijdA02 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.60 | 34.0 | 3.97e-01 | 96.0% | 87.1% |
| 4kt3B00 | 3.10.450.170 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › type vi secretion system effector-immunity co pseudomonas protegens | 0.58 | 40.0 | 3.07e-01 | 74.0% | 78.9% |
| 2i9yA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.58 | 49.0 | 3.50e-01 | 98.0% | 92.4% |
| 4e98C00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 43.0 | 3.40e-01 | 82.0% | 44.8% |
| 1f2uB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 40.0 | 2.93e-01 | 76.0% | 43.4% |
| 4y6iA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 43.0 | 3.45e-01 | 84.0% | 45.6% |
| 1ze3D00 | 3.10.20.410 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain | 0.57 | 46.0 | 3.68e-01 | 100.0% | 80.2% |
| 2czrA02 | 3.90.79.30 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › TBP-interacting protein, C-terminal domain | 0.56 | 39.0 | 3.03e-01 | 76.0% | 46.7% |
| 3ahpA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 42.0 | 3.33e-01 | 84.0% | 44.3% |
| 4gu4A01 | 2.10.25.20 | Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 | 0.55 | 31.0 | 3.35e-01 | 76.0% | 65.1% |
| 4iv9A03 | 1.10.405.40 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › | 0.54 | 34.0 | 2.50e-01 | 98.0% | 20.8% |
| 3dmgA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 44.0 | 3.01e-01 | 94.0% | 35.6% |
| 5f29B00 | 3.30.70.1450 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain | 0.54 | 39.0 | 3.50e-01 | 78.0% | 91.5% |
| 5exvC00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.54 | 42.0 | 3.00e-01 | 90.0% | 29.1% |
| 5cm2Z00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 41.0 | 2.82e-01 | 86.0% | 48.9% |
| 2qswA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 38.0 | 3.19e-01 | 78.0% | 68.9% |
| 1kqrA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 41.0 | 2.97e-01 | 96.0% | 28.1% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 41.0 | 3.70e-01 | 96.0% | 59.2% |
| 3lhoA01 | 3.10.180.50 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › | 0.53 | 39.0 | 2.58e-01 | 82.0% | 44.4% |
| 2xnjA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 42.0 | 3.48e-01 | 98.0% | 54.8% |
| 2c9oB02 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.52 | 43.0 | 3.38e-01 | 94.0% | 69.9% |
| 2fggA01 | 3.30.160.240 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 | 0.52 | 41.0 | 3.76e-01 | 96.0% | 77.3% |
| 2b0aA00 | 3.50.30.50 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Putative cyclase | 0.52 | 38.0 | 2.64e-01 | 98.0% | 21.5% |
| 6dgiA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 39.0 | 2.94e-01 | 90.0% | 78.5% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.51 | 34.0 | 3.49e-01 | 86.0% | 72.9% |
| 4mamB03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 39.0 | 2.89e-01 | 100.0% | 55.3% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5030510 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.88 | 68.0 | 6.86e-01 | 94.0% | 84.0% |
| 5081200 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.80 | 65.0 | 6.16e-01 | 100.0% | 75.0% |
| 5031242 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.79 | 67.0 | 6.38e-01 | 100.0% | 81.7% |
| 5061538 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.79 | 63.0 | 6.20e-01 | 100.0% | 81.8% |
| 4968137 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.74 | 58.0 | 5.67e-01 | 100.0% | 81.8% |
| 4968647 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.74 | 57.0 | 5.92e-01 | 88.0% | 97.8% |
| 4968450 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.74 | 60.0 | 5.87e-01 | 100.0% | 85.5% |
| 5031701 | 375.1.1.55 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MqsA_antitoxin | 0.74 | 61.0 | 5.68e-01 | 100.0% | 75.4% |
| 380878 | 375.1.1.55 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MqsA_antitoxin | 0.72 | 61.0 | 5.56e-01 | 100.0% | 74.3% |
| 4992532 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 59.0 | 5.66e-01 | 100.0% | 81.7% |
| 4993925 | 375.1.1.338 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7479 | 0.69 | 52.0 | 5.21e-01 | 94.0% | 82.0% |
| 3618061 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.68 | 55.0 | 4.62e-01 | 96.0% | 53.7% |
| 4944756 | 3604.1.1.0 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain | 0.67 | 54.0 | 5.15e-01 | 100.0% | 78.3% |
| 4476789 | 3124.1.1.1 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › NAC | 0.67 | 50.0 | 4.90e-01 | 94.0% | 76.4% |
| 4992806 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 56.0 | 5.51e-01 | 100.0% | 94.5% |
| 4159250 | 3124.1.1.1 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › NAC | 0.66 | 52.0 | 4.89e-01 | 100.0% | 70.8% |
| 4947479 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 47.0 | 4.79e-01 | 94.0% | 84.0% |
| 3602961 | 3124.1.1.1 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › NAC | 0.64 | 50.0 | 5.22e-01 | 98.0% | 100.0% |
| 4934815 | 3124.1.1.0 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain | 0.63 | 49.0 | 5.07e-01 | 94.0% | 97.8% |
| 4951742 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.62 | 47.0 | 4.44e-01 | 96.0% | 67.7% |
| 4661366 | 375.1.1.271 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › YokU | 0.62 | 49.0 | 4.53e-01 | 100.0% | 68.0% |
| 4947615 | 3604.1.1.0 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain | 0.62 | 48.0 | 4.56e-01 | 100.0% | 72.3% |
| 3833792 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.61 | 45.0 | 3.70e-01 | 82.0% | 43.2% |
| 3717699 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.59 | 45.0 | 3.04e-01 | 100.0% | 19.6% |
| 4971344 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 41.0 | 4.17e-01 | 86.0% | 74.0% |
| 3235619 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.58 | 43.0 | 2.69e-01 | 84.0% | 14.4% |
| 5011498 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.58 | 43.0 | 3.74e-01 | 98.0% | 49.4% |
| 3404225 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.57 | 44.0 | 3.03e-01 | 98.0% | 21.9% |
| 3562501 | 3075.1.1.0 ↗ | a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA | 0.57 | 46.0 | 4.05e-01 | 94.0% | 58.7% |
| 3263073 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.56 | 42.0 | 2.75e-01 | 86.0% | 24.4% |
| 3471203 | 2011.1.1.8 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 | 0.55 | 43.0 | 2.70e-01 | 96.0% | 29.6% |
| 3346388 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.55 | 46.0 | 3.13e-01 | 98.0% | 97.5% |
| 4172598 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.54 | 44.0 | 3.53e-01 | 100.0% | 75.4% |
| 4984635 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 41.0 | 3.33e-01 | 96.0% | 46.6% |
| 3992567 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 37.0 | 3.00e-01 | 82.0% | 61.6% |
| 3273866 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.52 | 44.0 | 2.55e-01 | 96.0% | 13.9% |
| 4397558 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.52 | 36.0 | 3.37e-01 | 76.0% | 55.7% |
| 3506789 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.52 | 40.0 | 2.89e-01 | 92.0% | 66.9% |
| 3623948 | 389.1.1.111 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › TNFR_nem | 0.51 | 28.0 | 3.09e-01 | 72.0% | 55.0% |
| 3666484 | 1.1.1.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp | 0.51 | 40.0 | 3.23e-01 | 100.0% | 58.5% |
| 4974958 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.51 | 42.0 | 2.57e-01 | 100.0% | 28.6% |
| 5074729 | 304.4.1.15 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › NIPSNAP | 0.51 | 37.0 | 2.91e-01 | 80.0% | 82.9% |
| 4956777 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.50 | 36.0 | 3.22e-01 | 82.0% | 66.3% |