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Filtrate_w_scaffold_3_prodigal-single.1__X__X__00029

Bact-Vir

Filtrate_w_scaffold_3_prodigal-single.1__X__X__00029

Identity

Kingdom:
phage

Quality

94.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-96
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 51.0 5.27e-01 80.6% 81.4%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 46.0 5.38e-01 75.3% 100.0%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.65 42.0 5.05e-01 74.2% 98.4%
5zr6A02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.64 48.0 5.22e-01 78.5% 100.0%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 43.0 5.07e-01 73.1% 100.0%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 4.76e-01 83.9% 84.9%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 4.73e-01 84.9% 81.1%
1gcbA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 52.0 3.38e-01 93.5% 77.7%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.59 35.0 3.98e-01 71.0% 80.6%
7c9rH01 3.90.50.10 Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 0.57 38.0 3.29e-01 77.4% 41.9%
3d31A03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 36.0 3.99e-01 73.1% 81.7%
2gfuA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 49.0 4.31e-01 92.5% 79.9%
2cztA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 46.0 4.01e-01 92.5% 97.4%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.56 40.0 3.62e-01 89.2% 53.5%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 46.0 4.01e-01 95.7% 90.6%
2i0rA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 41.0 2.83e-01 80.6% 29.4%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.55 41.0 4.38e-01 81.7% 100.0%
2dt4A00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.54 40.0 3.55e-01 80.6% 71.3%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 36.0 3.27e-01 72.0% 54.3%
3vmaA03 3.30.2060.10 Alpha Beta › 2-Layer Sandwich › Penicillin-binding protein 1b fold › Penicillin-binding protein 1b domain 0.50 35.0 3.55e-01 82.8% 74.4%
5j60B02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 38.0 3.56e-01 82.8% 100.0%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4931822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 47.0 5.48e-01 79.6% 87.7%
3556601 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.74 48.0 5.65e-01 78.5% 95.4%
4377781 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 53.0 5.69e-01 83.9% 100.0%
5018157 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.68 43.0 5.14e-01 76.3% 100.0%
3581631 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 44.0 5.18e-01 71.0% 95.4%
3482359 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 57.0 5.40e-01 92.5% 92.7%
3277206 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 48.0 5.18e-01 82.8% 89.7%
3765502 4.1.1.50 ↗ beta barrels › SH3 › SH3 › SH3 › MIB_HERC2 0.66 49.0 4.81e-01 77.4% 73.0%
3591211 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 49.0 5.27e-01 77.4% 93.8%
3787441 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 45.0 4.61e-01 75.3% 73.3%
3670468 4.1.1.332 ↗ beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.63 50.0 4.46e-01 84.9% 70.0%
3500084 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 43.0 4.90e-01 71.0% 95.7%
3530591 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.62 53.0 4.78e-01 91.4% 74.4%
4000858 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 43.0 4.84e-01 74.2% 95.7%
5018522 219.1.1.51 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.60 49.0 3.77e-01 87.1% 46.8%
3865022 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.60 50.0 4.55e-01 89.2% 78.4%
5031673 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 44.0 4.28e-01 83.9% 81.0%
3170091 243.1.1.116 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29059 0.55 38.0 3.64e-01 72.0% 70.9%
3496961 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 31.0 3.61e-01 74.2% 81.5%
138587 5.1.4.25 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Me-amine-dh_H 0.53 39.0 2.66e-01 80.6% 27.1%
3305631 375.1.1.184 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TOP3B 0.52 33.0 3.60e-01 78.5% 78.7%