Back to structures

Filtrate_w_scaffold_3_prodigal-single.1__X__X__00087

Bact-Vir

Filtrate_w_scaffold_3_prodigal-single.1__X__X__00087

Identity

Kingdom:
phage

Quality

66.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 103-157
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1el6A02 2.20.20.20 Mainly Beta › Single Sheet › Anthopleurin-A › Baseplate structural protein gp11, C-terminal domain 0.69 47.0 4.98e-01 74.5% 85.1%
2cc6A00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.67 48.0 4.59e-01 76.4% 85.9%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.67 50.0 3.93e-01 83.6% 80.8%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.66 47.0 3.46e-01 76.4% 37.1%
1mruA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 54.0 4.66e-01 94.5% 100.0%
3tmaA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 54.0 3.84e-01 94.5% 92.1%
4lubB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.65 56.0 4.66e-01 100.0% 90.0%
1twfB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.65 48.0 3.83e-01 83.6% 93.5%
2onlC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 49.0 4.29e-01 85.5% 83.7%
2pmzB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.63 47.0 3.74e-01 83.6% 93.5%
2pziB02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 52.0 3.91e-01 96.4% 93.8%
1g3pA02 3.90.450.1 Alpha Beta › Alpha-Beta Complex › Minor Coat Protein; domain 2 › Minor Coat Protein; Domain 2 0.63 44.0 3.68e-01 76.4% 49.0%
3gnlA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 49.0 3.58e-01 90.9% 94.5%
4wp3C00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.62 53.0 3.71e-01 100.0% 39.6%
5c3vA01 3.30.800.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase II Beta › Phosphatidylinositol Phosphate Kinase II Beta 0.61 51.0 3.67e-01 94.5% 99.4%
4qdjA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 49.0 3.39e-01 92.7% 87.0%
1v8cA02 3.30.1370.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain 0.60 42.0 3.77e-01 74.5% 72.5%
2fiwA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 50.0 3.61e-01 94.5% 63.1%
3cddA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.59 51.0 3.59e-01 100.0% 34.2%
3lvtA03 2.60.40.2210 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 52.0 3.95e-01 100.0% 65.1%
4paaA05 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.59 41.0 3.76e-01 76.4% 59.5%
3fvcA03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.59 49.0 3.98e-01 96.4% 97.3%
5mmiU01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 50.0 4.47e-01 100.0% 74.4%
4bwpB01 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.59 48.0 3.14e-01 92.7% 38.0%
1i0rA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 49.0 3.52e-01 94.5% 77.6%
1wruA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.58 51.0 3.62e-01 100.0% 37.7%
3d37B01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.58 49.0 3.55e-01 100.0% 37.9%
4e2aA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 48.0 3.43e-01 94.5% 76.5%
4o4bB00 3.30.470.160 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase 0.57 50.0 3.25e-01 100.0% 24.0%
4wsqB00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.57 46.0 2.97e-01 96.4% 31.0%
5ccbA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 45.0 3.16e-01 92.7% 91.9%
1blxA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 43.0 3.69e-01 83.6% 96.7%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.57 49.0 4.13e-01 100.0% 74.7%
5qinA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 48.0 4.24e-01 100.0% 91.8%
2vzyC00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 49.0 3.38e-01 100.0% 48.1%
5w7tA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 46.0 3.85e-01 94.5% 96.9%
2b9kA00 2.20.20.70 Mainly Beta › Single Sheet › Anthopleurin-A › 0.55 38.0 3.98e-01 74.5% 89.4%
3mdyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 46.0 3.76e-01 98.2% 69.1%
1b3qA04 2.40.50.180 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 0.55 38.0 3.75e-01 76.4% 90.5%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 45.0 3.44e-01 100.0% 80.3%
2pjdA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 44.0 3.27e-01 94.5% 89.7%
4m4xA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 42.0 3.44e-01 96.4% 99.2%
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.53 45.0 3.30e-01 100.0% 39.2%
2apoA03 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 40.0 3.47e-01 83.6% 60.9%
3wraA01 3.40.830.10 Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like 0.53 43.0 2.84e-01 100.0% 88.8%
2eabB03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 42.0 3.43e-01 98.2% 82.0%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.52 37.0 3.36e-01 74.5% 60.0%
2zpaA03 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 42.0 2.95e-01 94.5% 72.5%
3tfiA00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.51 42.0 2.67e-01 100.0% 52.3%
1vs3A02 3.30.70.660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.51 37.0 2.81e-01 76.4% 57.6%
3pftA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 41.0 3.14e-01 100.0% 62.8%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3792089 325.1.7.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.69 50.0 3.76e-01 76.4% 92.6%
3990370 387.1.1.0 few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.69 49.0 4.64e-01 74.5% 64.6%
5070341 325.1.7.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.69 49.0 3.84e-01 76.4% 95.2%
4030042 325.1.7.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.69 49.0 3.74e-01 76.4% 92.5%
3728982 325.1.7.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.68 49.0 3.73e-01 76.4% 91.5%
3990851 389.1.1.0 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.67 46.0 4.54e-01 74.5% 66.7%
3599394 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.67 56.0 3.27e-01 94.5% 21.7%
4929756 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 46.0 4.41e-01 72.7% 93.8%
2157296 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.67 55.0 3.99e-01 92.7% 58.7%
4002415 389.2.1.3 few secondary structure elements › EGF-like › Serine protease inhibitors › Serine protease inhibitors › TIL_2 0.65 46.0 4.42e-01 76.4% 64.6%
3198187 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.65 53.0 3.25e-01 94.5% 24.8%
4538400 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.64 57.0 4.33e-01 100.0% 76.2%
4024673 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.64 45.0 3.70e-01 76.4% 97.3%
3734880 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.64 53.0 3.20e-01 94.5% 24.8%
3639132 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.64 56.0 3.99e-01 100.0% 63.6%
5038876 1.1.13.2 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach 0.64 56.0 4.72e-01 98.2% 78.9%
5067380 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.64 56.0 4.16e-01 100.0% 68.6%
4036849 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.63 55.0 4.18e-01 100.0% 73.7%
3721665 213.1.1.27 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.63 51.0 3.46e-01 92.7% 44.4%
3991838 389.1.1.47 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › TIL_2 0.63 44.0 4.28e-01 76.4% 66.7%
3197822 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.62 51.0 3.08e-01 94.5% 23.5%
3726058 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.62 53.0 3.22e-01 98.2% 27.8%
2491427 330.22.1.0 a+b two layers › dsRBD-like 0.61 52.0 4.04e-01 100.0% 65.4%
4092486 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.61 55.0 3.80e-01 100.0% 36.1%
3942648 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.60 51.0 3.62e-01 94.5% 73.4%
3635949 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.60 48.0 3.11e-01 94.5% 38.6%
3970827 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.59 42.0 3.72e-01 76.4% 81.2%
3773179 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 43.0 3.18e-01 76.4% 43.0%
3789001 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 46.0 2.58e-01 89.1% 12.4%
4260208 1.1.13.62 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27197 0.58 51.0 4.15e-01 100.0% 64.8%
4883825 1.1.13.20 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.58 49.0 4.22e-01 98.2% 75.0%
3734783 2003.1.9.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.57 47.0 2.90e-01 94.5% 52.9%
4988103 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.57 49.0 4.18e-01 100.0% 75.8%
3232202 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 50.0 3.72e-01 100.0% 60.0%
3990261 389.4.1.7 few secondary structure elements › EGF-like › Fibulin-4 EGF-like 1 domain › Fibulin-4 EGF-like 1 domain › TIL_2 0.56 40.0 3.84e-01 76.4% 64.6%
3604610 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.56 48.0 4.64e-01 100.0% 95.4%
3817265 319.1.1.15 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF27746 0.56 40.0 3.31e-01 76.4% 90.5%
3444611 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.56 48.0 3.20e-01 98.2% 36.6%
5002662 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.56 48.0 4.04e-01 100.0% 67.0%
3511358 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.56 47.0 3.98e-01 100.0% 78.0%
3913172 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.56 47.0 3.21e-01 100.0% 28.3%
3488160 206.1.1.4 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase,TGF_beta_GS 0.56 47.0 2.91e-01 100.0% 21.2%
5004647 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.56 46.0 3.13e-01 100.0% 40.0%
4558682 76.1.1.1 beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M 0.55 47.0 3.24e-01 100.0% 90.0%
3973341 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.55 47.0 4.18e-01 100.0% 70.6%
3414220 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 44.0 2.80e-01 94.5% 33.0%
3497989 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 41.0 4.02e-01 83.6% 86.7%
5036917 304.102.1.13 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 0.54 37.0 2.78e-01 72.7% 66.7%
5002753 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.54 45.0 4.02e-01 100.0% 78.8%
5043359 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 37.0 3.52e-01 76.4% 94.3%
3944430 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.53 44.0 3.68e-01 100.0% 65.7%
4889788 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.52 43.0 3.69e-01 98.2% 80.4%
4927424 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 44.0 3.39e-01 100.0% 64.4%
4974179 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.52 35.0 3.02e-01 76.4% 61.8%
5026275 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.74e-01 100.0% 64.4%
3632684 101.1.21.0 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase 0.51 37.0 2.29e-01 85.5% 44.6%
5002659 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.50 42.0 3.80e-01 98.2% 83.7%
3724091 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.50 36.0 2.49e-01 81.8% 63.9%
4275176 304.102.1.5 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 0.50 42.0 2.87e-01 100.0% 41.3%