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Filtrate_w_scaffold_3_prodigal-single.1__X__X__00089
Bact-VirFiltrate_w_scaffold_3_prodigal-single.1__X__X__00089
Identity
- Kingdom:
- phage
Quality
90.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-57
Domain cluster:
rep: js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00208__D4-58
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14207.12 best | DpnD-PcfM | 30.5 | 3.60e-07 | 89.1% | 93.5% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ej8B00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 41.0 | 3.13e-01 | 74.5% | 42.0% |
| 2jl6101 | 2.20.150.30 | Mainly Beta › Single Sheet › putative 5-dehydro-2- deoxygluconokinase like fold › | 0.57 | 34.0 | 3.70e-01 | 100.0% | 74.4% |
| 3mfiA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.53 | 35.0 | 2.86e-01 | 72.7% | 32.8% |
| 3hr6A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 42.0 | 3.36e-01 | 96.4% | 41.9% |
| 1tr0A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 41.0 | 3.44e-01 | 92.7% | 100.0% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4293895 | 3115.2.1.2 ↗ | a+b two layers › GP2-like › GP2 › GP2 › DpnD-PcfM | 0.97 | 68.0 | 8.02e-01 | 78.2% | 100.0% |
| 4317631 | 220.1.1.18 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PTB | 0.65 | 52.0 | 3.79e-01 | 89.1% | 95.5% |
| 3564143 | 389.1.1.185 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › JAG1 | 0.55 | 40.0 | 2.97e-01 | 80.0% | 64.8% |
| 4222275 | 5052.1.1.1 ↗ | alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein › SDF | 0.55 | 44.0 | 2.67e-01 | 100.0% | 82.5% |
| 3300233 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.54 | 37.0 | 3.19e-01 | 70.9% | 82.4% |
| 3705967 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.54 | 39.0 | 2.63e-01 | 80.0% | 34.7% |
| 3620631 | 859.1.1.0 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 | 0.53 | 39.0 | 2.93e-01 | 89.1% | 88.6% |
| 3599190 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 38.0 | 2.65e-01 | 80.0% | 63.5% |
| 5021080 | 2003.1.2.17 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase | 0.52 | 42.0 | 2.56e-01 | 100.0% | 27.5% |
| 4940166 | 2003.1.2.17 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase | 0.51 | 36.0 | 2.24e-01 | 78.2% | 56.5% |
| 3190235 | 11.1.1.425 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Egh16-like | 0.51 | 34.0 | 2.40e-01 | 70.9% | 61.5% |
| 3708379 | 5.1.5.208 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › EMC1_C, PQQ_2, Beta-prop_EMC1_N | 0.51 | 42.0 | 2.40e-01 | 100.0% | 7.3% |
| 3190082 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.50 | 40.0 | 3.42e-01 | 94.5% | 98.0% |