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Filtrate_w_scaffold_3_prodigal-single.1__X__X__00133

Bact-Vir

Filtrate_w_scaffold_3_prodigal-single.1__X__X__00133

Identity

Kingdom:
phage

Quality

81.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-114
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.64 38.0 3.93e-01 87.5% 59.8%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.62 51.0 5.22e-01 100.0% 93.6%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.60 39.0 4.45e-01 95.5% 91.3%
1dbzA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.57 50.0 4.18e-01 92.9% 61.4%
1b9vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.56 46.0 3.21e-01 90.2% 80.5%
3cwxA00 3.40.1420.20 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD 0.56 48.0 4.63e-01 97.3% 83.2%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 36.0 3.55e-01 95.5% 60.8%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 46.0 4.26e-01 100.0% 91.3%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.52 36.0 3.94e-01 100.0% 88.8%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 39.0 3.09e-01 81.2% 73.6%
2a0aA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 43.0 4.12e-01 97.3% 96.2%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 43.0 4.18e-01 99.1% 95.3%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3229045 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.65 38.0 4.17e-01 79.5% 68.4%
3479080 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.64 42.0 4.71e-01 100.0% 85.2%
4879580 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.59 40.0 3.60e-01 83.0% 51.0%
3715951 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.59 53.0 5.12e-01 100.0% 90.4%
3244934 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.58 40.0 2.83e-01 89.3% 24.0%
4023269 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.58 49.0 5.01e-01 96.4% 94.5%
4179057 4099.1.1.26 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Kre28 0.57 43.0 4.49e-01 92.0% 89.0%
3609492 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.57 40.0 3.75e-01 91.1% 58.6%
3727865 331.3.1.2 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Ring_hydroxyl_A 0.55 50.0 4.02e-01 100.0% 55.3%
3743698 12.3.1.19 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.54 47.0 3.43e-01 97.3% 89.8%
4284036 4099.1.1.26 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Kre28 0.54 41.0 4.25e-01 91.1% 86.7%
3679819 331.3.1.25 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PaO 0.54 48.0 3.65e-01 99.1% 86.0%
4937423 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 33.0 3.66e-01 89.3% 80.0%
165398 7515.1.1.2 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase 0.53 43.0 2.89e-01 88.4% 82.6%
3542023 5.1.4.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.53 41.0 2.90e-01 84.8% 55.2%
4011446 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.52 45.0 3.29e-01 96.4% 88.5%
3728174 511.1.1.0 ↗ beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.52 41.0 3.56e-01 81.2% 96.4%
134104 9.1.1.22 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3642 0.52 36.0 3.94e-01 100.0% 88.8%
3960238 331.3.1.2 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Ring_hydroxyl_A 0.51 43.0 3.70e-01 92.0% 77.8%
3597339 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 39.0 2.97e-01 79.5% 49.6%
3240086 5.1.5.54 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_NOL10_N 0.51 40.0 2.89e-01 86.6% 75.9%
4015961 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 42.0 2.78e-01 89.3% 78.3%
3954338 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.50 42.0 3.64e-01 93.8% 97.3%
5036836 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.50 42.0 3.35e-01 91.1% 79.6%
3865082 9.13.1.0 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.50 35.0 3.84e-01 88.4% 90.0%