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Filtrate_w_scaffold_3_prodigal-single.1__X__X__00168

Bact-Vir

Filtrate_w_scaffold_3_prodigal-single.1__X__X__00168

Identity

Kingdom:
phage

Quality

84.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-86
PDB
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.60 39.0 3.63e-01 87.5% 53.0%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 37.0 3.48e-01 87.5% 52.0%
3lyxB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 43.0 3.84e-01 87.5% 76.7%
5svgC00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 43.0 3.81e-01 87.5% 85.1%
3mqqB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 43.0 3.84e-01 87.5% 78.0%
6kjuB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 43.0 3.84e-01 87.5% 81.2%
2pd8B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 45.0 3.76e-01 92.5% 90.0%
2gj3A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 43.0 3.77e-01 87.5% 77.3%
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 42.0 3.84e-01 87.5% 82.1%
1bywA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 43.0 3.91e-01 88.7% 88.2%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 38.0 3.26e-01 77.5% 83.8%
7a6pB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 42.0 3.58e-01 87.5% 68.8%
3oloA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 42.0 3.82e-01 87.5% 76.6%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 31.0 3.09e-01 100.0% 52.4%
4hoiB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 42.0 3.80e-01 88.7% 85.1%
2vlgC00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 41.0 3.84e-01 87.5% 88.2%
1d06A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 41.0 3.50e-01 86.3% 71.5%
3tssA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 35.0 3.71e-01 100.0% 80.3%
3rtyB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 41.0 3.72e-01 87.5% 89.0%
2v0uA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 41.0 3.40e-01 87.5% 65.1%
4uy8X00 2.30.170.40 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 0.51 33.0 3.40e-01 95.0% 68.8%
2z6cA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 41.0 3.60e-01 87.5% 77.7%
6lbtA01 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 44.0 3.56e-01 92.5% 89.4%
5lp7E01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.50 40.0 3.13e-01 92.5% 85.2%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4991835 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 41.0 5.12e-01 72.5% 100.0%
4097524 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 39.0 4.13e-01 100.0% 77.1%
3375767 1.1.1.27 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_N 0.56 41.0 3.45e-01 78.8% 72.1%
4980686 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 44.0 3.96e-01 86.3% 88.2%
5075481 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.55 44.0 3.19e-01 87.5% 37.9%
5002290 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.55 43.0 3.66e-01 86.3% 71.9%
4944872 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 43.0 3.63e-01 87.5% 66.4%
4997261 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.54 43.0 4.02e-01 87.5% 88.0%
3274454 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.54 43.0 2.62e-01 88.7% 16.3%
4986904 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.54 43.0 3.03e-01 87.5% 35.4%
3687133 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.54 43.0 3.63e-01 87.5% 70.4%
4939381 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.54 43.0 3.65e-01 88.7% 70.4%
4142766 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.54 43.0 3.67e-01 87.5% 70.8%
3262608 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.54 42.0 3.66e-01 87.5% 68.5%
4996834 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.53 42.0 3.61e-01 87.5% 65.2%
3946851 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.53 42.0 3.46e-01 87.5% 59.4%
4300729 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 43.0 3.24e-01 87.5% 48.7%
5052073 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.53 42.0 2.87e-01 87.5% 29.5%
4160607 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 42.0 2.84e-01 87.5% 28.9%
1388732 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.53 42.0 3.90e-01 87.5% 91.3%
4154378 4232.1.1.1 few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.53 34.0 3.73e-01 97.5% 81.5%
4996829 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.52 41.0 2.63e-01 86.3% 21.2%
4970454 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.52 42.0 3.51e-01 88.7% 66.2%
4407558 4232.1.1.1 few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.52 33.0 3.77e-01 96.2% 86.7%
1272062 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 42.0 3.80e-01 87.5% 88.0%
4047115 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.52 39.0 3.68e-01 100.0% 64.0%
4532986 4232.1.1.1 few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.52 34.0 3.71e-01 90.0% 81.5%
3362008 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 42.0 3.25e-01 87.5% 52.8%
4060191 223.1.1.85 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3+PAS_9 0.52 41.0 2.86e-01 87.5% 32.8%
4246477 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 41.0 3.52e-01 87.5% 69.6%
4968255 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 41.0 3.59e-01 87.5% 79.2%
3386877 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.52 41.0 3.31e-01 87.5% 56.9%
4984595 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.51 40.0 2.91e-01 87.5% 36.0%
None 0.51 41.0 3.44e-01 87.5% 67.4%
3291030 223.1.1.40 a+b three layers › Profilin-like › sensor domains › sensor domains › Rv3651-like_middle 0.51 40.0 3.61e-01 87.5% 86.1%
134941 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.51 40.0 3.74e-01 88.7% 89.5%
4950839 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.50 40.0 2.78e-01 87.5% 31.9%
D2 high residues 101-168
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b0eD00 3.10.20.410 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain 0.61 40.0 3.61e-01 94.1% 47.0%
4gnxC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 43.0 3.25e-01 77.9% 81.4%
4exoA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 48.0 3.73e-01 86.8% 55.5%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 47.0 3.76e-01 92.6% 82.6%
3pnrA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 49.0 3.41e-01 100.0% 78.3%
7xlqD01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 44.0 3.65e-01 89.7% 72.1%
3obqA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.55 46.0 3.75e-01 98.5% 83.0%
1t6eX01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.55 41.0 3.10e-01 82.4% 49.4%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 34.0 3.40e-01 70.6% 58.9%
1cukA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 36.0 3.70e-01 100.0% 72.7%
1bvsA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 35.0 3.64e-01 100.0% 72.3%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 39.0 3.31e-01 80.9% 80.6%
1fmbA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.53 39.0 3.41e-01 80.9% 51.9%
6wo0A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 38.0 2.75e-01 77.9% 84.5%
3fgyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 43.0 3.59e-01 100.0% 85.9%
3kspA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 43.0 3.62e-01 100.0% 90.7%
2uvaG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 35.0 2.94e-01 75.0% 55.1%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 40.0 3.27e-01 95.6% 93.0%
3c8cB02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 44.0 3.70e-01 95.6% 89.4%
2uxwA03 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.50 37.0 3.24e-01 82.4% 80.9%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.50 38.0 3.58e-01 85.3% 95.5%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.50 38.0 2.91e-01 83.8% 49.7%
2kvkA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.50 36.0 2.93e-01 77.9% 59.0%
6pzjA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 41.0 3.25e-01 92.6% 89.9%
4rg1A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 34.0 3.55e-01 72.1% 92.3%
8c5yA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 35.0 2.72e-01 75.0% 86.5%
1of5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 42.0 3.37e-01 100.0% 82.5%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3598658 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 44.0 3.37e-01 100.0% 32.9%
4031715 2.1.1.85 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecJ_OB 0.61 45.0 3.85e-01 77.9% 89.1%
5058787 2.1.1.85 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecJ_OB 0.61 46.0 3.95e-01 82.4% 88.2%
3386820 2.1.1.85 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecJ_OB 0.59 45.0 3.90e-01 82.4% 89.8%
3588902 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 47.0 3.79e-01 89.7% 47.9%
3611425 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 41.0 3.89e-01 75.0% 60.0%
3914285 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 43.0 3.30e-01 77.9% 86.9%
4993656 1.1.1.3 beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP 0.58 44.0 3.63e-01 80.9% 45.8%
3484133 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 46.0 3.84e-01 89.7% 74.4%
3618860 223.1.1.29 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 0.58 46.0 3.71e-01 89.7% 71.4%
3585516 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 43.0 4.15e-01 80.9% 91.0%
3223498 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.57 45.0 3.77e-01 89.7% 70.8%
3858464 2.1.1.213 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_POT1A 0.57 41.0 3.21e-01 77.9% 82.6%
2137378 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 44.0 3.99e-01 88.2% 78.4%
3788285 395.1.1.4 few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › Flocculin_t3 0.56 37.0 4.23e-01 95.6% 94.0%
4965770 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.56 44.0 3.75e-01 89.7% 85.0%
3794167 376.1.3.30 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › C6_DPF 0.56 32.0 2.89e-01 72.1% 37.4%
3218749 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.55 33.0 3.51e-01 98.5% 68.3%
5053323 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.54 43.0 3.70e-01 89.7% 78.3%
3269021 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 43.0 3.71e-01 91.2% 79.0%
4999855 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 43.0 3.74e-01 89.7% 83.6%
3839556 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 42.0 2.90e-01 89.7% 29.1%
3925865 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.53 38.0 3.24e-01 77.9% 43.3%
5002480 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 42.0 3.20e-01 89.7% 40.6%
4160858 241.1.1.2 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.53 37.0 2.97e-01 75.0% 91.3%
4930499 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.53 41.0 2.93e-01 89.7% 37.5%
3585914 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 41.0 3.04e-01 89.7% 52.4%
4082864 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.53 38.0 3.35e-01 77.9% 80.0%
4458321 2.1.1.14 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.53 35.0 3.56e-01 100.0% 72.3%
3627036 223.1.1.98 a+b three layers › Profilin-like › sensor domains › sensor domains › PF30670 0.52 41.0 3.68e-01 86.8% 88.0%
4264254 2.1.1.14 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.52 35.0 3.42e-01 100.0% 62.7%
3420143 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.52 38.0 2.99e-01 80.9% 48.8%
5048403 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 40.0 3.66e-01 89.7% 83.0%
5055900 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.52 41.0 3.37e-01 91.2% 65.0%
3579212 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.52 40.0 3.60e-01 89.7% 81.0%
4930368 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.51 40.0 3.56e-01 92.6% 81.8%
1710492 241.1.1.2 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.51 40.0 3.27e-01 95.6% 93.0%
4887266 2492.1.1.42 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB, MitMem_reg 0.51 38.0 2.92e-01 80.9% 34.7%
5009916 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.50 37.0 3.22e-01 80.9% 51.4%