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Filtrate_w_scaffold_3_prodigal-single.1__X__X__00175

Bact-Vir

Filtrate_w_scaffold_3_prodigal-single.1__X__X__00175

Identity

Kingdom:
phage

Quality

62.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-119
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5zzjA02 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.58 47.0 3.47e-01 100.0% 33.9%
2g47A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.56 50.0 4.06e-01 100.0% 69.1%
5eufA01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.56 50.0 4.08e-01 100.0% 69.8%
4ddpA00 1.10.418.40 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Autophagy protein 6/Beclin 1 0.54 43.0 3.71e-01 87.3% 72.8%
3d0sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 28.0 3.21e-01 94.1% 73.8%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3277476 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.52 43.0 4.03e-01 98.3% 71.3%
3338341 601.42.1.1 alpha bundles › Four-helical up-and-down bundle › Helical bundle in ROQ domain › Helical bundle in ROQ domain › At4g04980_N 0.51 41.0 4.03e-01 85.6% 97.6%
4199769 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.50 38.0 3.12e-01 79.7% 65.9%
D2 high residues 124-268
PDB