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Filtrate_w_scaffold_3_prodigal-single.1__X__X__00187
Bact-VirFiltrate_w_scaffold_3_prodigal-single.1__X__X__00187
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-80
Domain cluster:
rep: IMGVR_UViG_3300021509_000104-3300021509-Ga0190304_10061875__D1-94
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1uv7A00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.67 | 55.0 | 5.61e-01 | 100.0% | 90.8% |
| 2j3rB00 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.67 | 60.0 | 4.76e-01 | 100.0% | 58.6% |
| 3getA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.67 | 41.0 | 3.85e-01 | 83.1% | 50.0% |
| 3njcA00 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.60 | 51.0 | 4.19e-01 | 98.7% | 56.9% |
| 3tviA02 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.59 | 47.0 | 3.75e-01 | 94.8% | 42.1% |
| 2dulA02 | 3.30.56.70 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › N2,N2-dimethylguanosine tRNA methyltransferase, C-terminal domain | 0.59 | 35.0 | 3.93e-01 | 70.1% | 78.0% |
| 1kn6A00 | 3.30.70.850 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8, pro-domain | 0.58 | 42.0 | 4.34e-01 | 92.2% | 83.6% |
| 3kewB02 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.58 | 50.0 | 4.16e-01 | 100.0% | 86.1% |
| 4jlxA02 | 3.30.460.90 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.57 | 48.0 | 3.90e-01 | 100.0% | 64.9% |
| 2e1bA02 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.57 | 49.0 | 4.23e-01 | 100.0% | 90.7% |
| 2gxgA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 43.0 | 3.59e-01 | 84.4% | 77.1% |
| 3zx4A02 | 3.30.980.20 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Putative mannosyl-3-phosphoglycerate phosphatase; domain 2 | 0.55 | 48.0 | 4.69e-01 | 100.0% | 92.0% |
| 5eriA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 42.0 | 3.46e-01 | 84.4% | 71.9% |
| 2g7uC02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.55 | 43.0 | 3.37e-01 | 87.0% | 96.6% |
| 6g4bA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 42.0 | 3.38e-01 | 100.0% | 40.4% |
| 2cy9B00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 44.0 | 3.75e-01 | 93.5% | 90.2% |
| 1hp7A01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.53 | 37.0 | 3.49e-01 | 80.5% | 58.9% |
| 2laeA00 | 3.30.310.170 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Outer membrane protein assembly factor BamC | 0.53 | 38.0 | 3.44e-01 | 79.2% | 83.1% |
| 3m8bA01 | 2.170.130.10 | Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain | 0.53 | 38.0 | 3.36e-01 | 100.0% | 48.4% |
| 3bpvA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 40.0 | 3.34e-01 | 83.1% | 69.3% |
| 3ovcA01 | 3.30.200.150 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › | 0.51 | 39.0 | 4.05e-01 | 96.1% | 91.5% |
| 2ethA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 36.0 | 3.01e-01 | 75.3% | 58.9% |
| 4i8oA02 | 3.30.160.690 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain | 0.50 | 39.0 | 3.73e-01 | 84.4% | 82.2% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3839295 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.69 | 54.0 | 5.59e-01 | 100.0% | 94.3% |
| 5072113 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.65 | 58.0 | 5.02e-01 | 100.0% | 69.7% |
| 5051349 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.64 | 57.0 | 4.66e-01 | 100.0% | 66.9% |
| 3507097 | 304.20.1.3 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D6 | 0.63 | 54.0 | 4.68e-01 | 92.2% | 64.3% |
| 4971721 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.63 | 56.0 | 4.68e-01 | 100.0% | 65.2% |
| 3314359 | 320.1.1.11 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › PF27261 | 0.63 | 42.0 | 4.31e-01 | 96.1% | 70.7% |
| 5000990 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.62 | 47.0 | 3.78e-01 | 81.8% | 43.2% |
| 3488599 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.61 | 45.0 | 3.27e-01 | 80.5% | 77.9% |
| 4931524 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.61 | 53.0 | 4.20e-01 | 98.7% | 55.2% |
| 3467276 | 1.1.1.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_C, TAXi_N | 0.61 | 52.0 | 3.40e-01 | 100.0% | 22.5% |
| 3814658 | 330.7.1.0 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain | 0.61 | 36.0 | 4.24e-01 | 97.4% | 97.8% |
| 5072409 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.60 | 52.0 | 4.04e-01 | 100.0% | 49.4% |
| 3722375 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.59 | 48.0 | 4.26e-01 | 88.3% | 64.5% |
| 5072957 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.57 | 50.0 | 3.97e-01 | 100.0% | 53.7% |
| 4955569 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.57 | 50.0 | 3.89e-01 | 100.0% | 50.3% |
| 2565004 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.57 | 45.0 | 4.30e-01 | 100.0% | 72.6% |
| 4944306 | 316.1.1.1 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol | 0.56 | 47.0 | 3.67e-01 | 100.0% | 42.3% |
| 3184994 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.55 | 43.0 | 3.71e-01 | 87.0% | 53.8% |
| 4989305 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.55 | 48.0 | 4.29e-01 | 100.0% | 78.9% |
| 3637738 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.55 | 30.0 | 3.22e-01 | 71.4% | 60.0% |
| 3759086 | 3016.1.1.21 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › PDXDC1-like_cen | 0.54 | 46.0 | 3.87e-01 | 100.0% | 66.2% |
| 3235731 | 604.3.1.11 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 | 0.54 | 47.0 | 3.45e-01 | 100.0% | 72.0% |
| 3405724 | 376.1.1.32 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP_var | 0.54 | 40.0 | 3.51e-01 | 80.5% | 75.8% |
| 3742222 | 3016.1.1.10 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P | 0.54 | 38.0 | 3.56e-01 | 100.0% | 58.2% |
| 4945883 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.54 | 45.0 | 4.21e-01 | 97.4% | 78.0% |
| 3183863 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.53 | 46.0 | 4.46e-01 | 100.0% | 96.7% |
| 3642043 | 101.1.2.245 ↗ | alpha arrays › HTH › HTH › winged helix domain › PORR | 0.53 | 37.0 | 3.02e-01 | 72.7% | 56.6% |
| 3753305 | 3016.1.1.22 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › PDXDC1-like_cen2 | 0.53 | 45.0 | 4.09e-01 | 100.0% | 74.5% |
| 4953814 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.53 | 37.0 | 4.01e-01 | 94.8% | 95.0% |
| 5000875 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.52 | 44.0 | 4.20e-01 | 96.1% | 83.3% |
| 3519132 | 316.1.1.6 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Mab-21 | 0.52 | 42.0 | 3.06e-01 | 93.5% | 72.2% |
| 4571673 | 331.22.1.2 ↗ | a+b two layers › TBP-like › Outer membrane protein assembly factor BamC › Outer membrane protein assembly factor BamC › PF29358 | 0.51 | 41.0 | 3.20e-01 | 90.9% | 70.6% |
| 4944426 | 3740.1.1.5 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › Fer4_22 | 0.50 | 35.0 | 2.44e-01 | 72.7% | 51.5% |