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Filtrate_w_scaffold_3_prodigal-single.1__X__X__00195

Bact-Vir

Filtrate_w_scaffold_3_prodigal-single.1__X__X__00195

Identity

Kingdom:
phage

Quality

81.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 200-335
PDB
D2 medium residues 139-198
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.72 54.0 4.33e-01 81.7% 45.5%
1l8rA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.69 61.0 5.15e-01 100.0% 100.0%
1wu7A02 3.30.240.30 Alpha Beta › 2-Layer Sandwich › CRO Repressor › 0.69 46.0 4.81e-01 70.0% 76.4%
2fwrA01 3.40.1170.30 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › 0.68 46.0 4.71e-01 83.3% 73.7%
4c9yA00 1.10.10.1890 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like 0.63 44.0 3.62e-01 76.7% 49.6%
6vu9A02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.63 45.0 2.91e-01 76.7% 60.6%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 42.0 3.32e-01 70.0% 72.6%
6qdjA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 45.0 4.24e-01 80.0% 98.7%
5i0hA02 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.62 45.0 4.26e-01 78.3% 97.2%
2i0zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 45.0 3.00e-01 83.3% 30.4%
3cdhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 40.0 3.18e-01 70.0% 66.4%
3dgpA00 3.30.70.2610 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 44.0 4.45e-01 85.0% 91.9%
3dgpB00 3.30.70.1220 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TFB5-like 0.58 47.0 4.67e-01 91.7% 88.9%
2wz1B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.58 44.0 3.17e-01 85.0% 32.7%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 40.0 3.40e-01 73.3% 55.4%
4b8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 38.0 2.95e-01 70.0% 48.6%
1qgiA01 3.30.386.10 Alpha Beta › 2-Layer Sandwich › Chitosanase; Chain A, domain 2 › Chitosanase, subunit A, domain 2 0.57 39.0 3.07e-01 73.3% 68.7%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 2.99e-01 70.0% 62.3%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 40.0 3.34e-01 73.3% 54.8%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 30.0 2.62e-01 76.7% 33.3%
1mw9X02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.56 38.0 2.82e-01 70.0% 43.6%
4bpxD00 1.20.930.80 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.56 46.0 3.24e-01 95.0% 28.2%
3ui3A02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 41.0 3.54e-01 80.0% 71.4%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.45e-01 75.0% 63.4%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 3.23e-01 98.3% 45.3%
2qlzA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 31.0 3.13e-01 85.0% 52.4%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 3.32e-01 71.7% 65.6%
1gmuA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.55 38.0 3.77e-01 76.7% 76.1%
4mo0A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.54 43.0 3.98e-01 90.0% 75.9%
3r4iA02 6.10.140.960 Special › Helix non-globular › Helix Hairpins › 0.54 27.0 2.75e-01 76.7% 41.7%
1gzsB00 1.10.4120.10 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › SopE-like, GEF domain 0.54 45.0 3.34e-01 96.7% 87.9%
1in0A01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 38.0 3.63e-01 75.0% 84.3%
1aroP03 3.30.70.370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 45.0 3.47e-01 100.0% 59.3%
1gkuB06 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.53 42.0 3.16e-01 88.3% 99.4%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 42.0 3.55e-01 86.7% 64.4%
7txnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 35.0 3.18e-01 70.0% 61.1%
5xyiK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.21e-01 73.3% 66.7%
1oltA02 1.10.10.920 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.51 35.0 3.23e-01 73.3% 79.0%
1earA02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.51 39.0 3.80e-01 88.3% 78.3%
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 34.0 3.02e-01 70.0% 69.4%
2jscB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 34.0 3.17e-01 71.7% 61.3%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5036469 2487.1.1.0 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.79 57.0 4.47e-01 76.7% 86.4%
4948095 2487.1.1.0 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.75 56.0 4.55e-01 81.7% 95.7%
3385701 101.1.9.95 alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF3972 0.73 51.0 5.26e-01 73.3% 94.5%
5045868 2487.1.1.0 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.73 52.0 4.04e-01 76.7% 81.5%
3960483 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.73 49.0 5.23e-01 70.0% 100.0%
1316879 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.72 51.0 5.08e-01 75.0% 96.7%
2559749 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.71 51.0 4.52e-01 76.7% 94.3%
3840108 101.1.9.95 alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF3972 0.71 52.0 5.24e-01 80.0% 95.0%
3953197 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.70 51.0 4.43e-01 78.3% 58.9%
5001240 2007.1.2.5 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Bmp 0.70 51.0 3.29e-01 78.3% 17.8%
3281256 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.69 51.0 4.74e-01 81.7% 72.5%
5023877 2487.1.1.0 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.69 56.0 4.46e-01 91.7% 92.8%
5027627 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.68 48.0 4.96e-01 75.0% 100.0%
3604634 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.68 48.0 4.90e-01 76.7% 98.3%
3289373 3601.1.1.0 alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain 0.68 50.0 3.80e-01 80.0% 40.7%
4954942 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.64 46.0 4.53e-01 78.3% 96.9%
3701635 3696.1.1.0 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.63 50.0 4.34e-01 88.3% 63.2%
374782 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.60 40.0 3.13e-01 70.0% 65.0%
4936264 2003.1.2.19 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Thi4 0.60 45.0 2.98e-01 83.3% 19.0%
3589467 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.59 43.0 3.92e-01 80.0% 62.4%
4646162 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.58 45.0 4.40e-01 83.3% 81.5%
3208315 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.58 50.0 2.91e-01 100.0% 36.8%
5022936 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 43.0 3.54e-01 80.0% 60.0%
2320836 4340.1.1.1 a+b complex topology › TFB5-related › TFB5-related › TFB5-related › Tfb5 0.58 47.0 4.57e-01 91.7% 84.8%
5062257 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 40.0 3.42e-01 73.3% 65.7%
3589675 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.57 38.0 4.03e-01 71.7% 100.0%
3442533 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.57 40.0 3.22e-01 75.0% 58.3%
5052967 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 38.0 2.71e-01 70.0% 33.0%
4956112 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.57 43.0 3.91e-01 85.0% 69.4%
4970541 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 39.0 3.35e-01 73.3% 97.0%
4369057 101.1.2.19 alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.56 38.0 2.80e-01 70.0% 43.0%
4970540 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 37.0 3.26e-01 70.0% 72.6%
4174001 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.56 40.0 3.95e-01 78.3% 81.5%
4435605 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.56 44.0 3.75e-01 88.3% 60.0%
4174817 327.16.1.17 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › PF27474 0.56 39.0 4.20e-01 75.0% 95.9%
1885538 242.4.1.0 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain 0.56 40.0 3.25e-01 76.7% 55.2%
4985673 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 38.0 3.34e-01 71.7% 77.8%
5074949 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 37.0 3.28e-01 70.0% 73.3%
5040192 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.55 40.0 3.53e-01 80.0% 68.8%
4963651 101.1.2.926 alpha arrays › HTH › HTH › winged helix domain › DUF7346 0.54 36.0 3.36e-01 71.7% 69.4%
5074705 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 36.0 3.42e-01 70.0% 93.3%
5083428 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.54 38.0 3.71e-01 75.0% 87.7%
3838360 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.54 40.0 2.64e-01 80.0% 18.1%
3811947 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.54 45.0 3.83e-01 98.3% 100.0%
4235437 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.53 41.0 3.63e-01 88.3% 66.3%
5015916 2002.1.1.459 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PF26257 0.53 40.0 2.56e-01 86.7% 18.6%
5071596 242.4.1.2 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central 0.53 38.0 3.49e-01 76.7% 82.5%
5006888 304.22.1.2 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › PF26257 0.53 37.0 3.57e-01 75.0% 68.6%
4956538 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.53 36.0 3.47e-01 73.3% 74.7%
5037711 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.53 39.0 3.89e-01 85.0% 84.6%
4249416 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.52 37.0 3.58e-01 76.7% 74.3%
5040248 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.52 39.0 3.74e-01 85.0% 82.7%
4976190 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.52 38.0 3.78e-01 81.7% 84.6%
3583392 101.1.2.506 alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 0.52 36.0 3.40e-01 73.3% 62.7%
2590 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.52 34.0 2.71e-01 70.0% 45.3%
4938256 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.51 38.0 3.55e-01 80.0% 69.3%
4933956 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 3.29e-01 75.0% 72.3%
4929591 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.51 39.0 3.55e-01 86.7% 69.7%
3690781 304.48.1.11 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.51 37.0 3.27e-01 80.0% 76.8%
3596109 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.51 37.0 2.99e-01 80.0% 56.9%
4949564 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.51 41.0 4.13e-01 91.7% 90.0%
3245966 304.48.1.11 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.51 37.0 2.92e-01 80.0% 54.3%
3951221 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.51 37.0 3.33e-01 78.3% 65.9%
4141722 605.1.1.289 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › PF26892 0.51 35.0 3.03e-01 73.3% 48.0%
5025092 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.50 36.0 3.44e-01 80.0% 72.0%
4940555 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.50 36.0 2.47e-01 78.3% 97.6%