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Filtrate_w_scaffold_3_prodigal-single.1__X__X__00261

Bact-Vir

Filtrate_w_scaffold_3_prodigal-single.1__X__X__00261

Identity

Kingdom:
phage

Quality

93.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-76
PDB
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fu0A00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.83 77.0 7.30e-01 100.0% 98.9%
1jelP00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.80 73.0 7.04e-01 100.0% 94.1%
1j5yA02 3.30.1340.20 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain 0.78 70.0 6.20e-01 100.0% 91.6%
3tj8A02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.74 50.0 5.09e-01 100.0% 71.6%
5t17A00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.74 65.0 6.31e-01 100.0% 95.3%
6dgiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.70 51.0 5.28e-01 77.3% 100.0%
3mwbB03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.69 56.0 5.21e-01 100.0% 70.5%
2jheA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.68 53.0 5.21e-01 100.0% 79.0%
4hiaA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.68 56.0 4.25e-01 90.7% 84.7%
3tiiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.67 46.0 4.90e-01 73.3% 100.0%
1nh8A03 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 47.0 4.95e-01 100.0% 83.6%
3bv8A00 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.65 41.0 3.97e-01 100.0% 55.3%
5zneA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 48.0 4.94e-01 100.0% 83.6%
2khdA00 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 53.0 4.71e-01 100.0% 63.9%
2qmwA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 54.0 5.36e-01 100.0% 90.9%
1wdeA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.64 53.0 4.13e-01 94.7% 73.6%
2rbkA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.64 54.0 4.96e-01 96.0% 85.1%
3rjaA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.63 55.0 3.88e-01 100.0% 31.4%
2l3mA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 48.0 4.93e-01 100.0% 88.7%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.62 49.0 4.17e-01 90.7% 89.9%
5fxdA03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.62 56.0 3.92e-01 100.0% 33.5%
1qltA03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.62 55.0 3.91e-01 100.0% 45.0%
1wvfA03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.62 55.0 3.89e-01 100.0% 45.5%
4ud8A03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.61 55.0 4.11e-01 100.0% 46.7%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.61 52.0 4.77e-01 100.0% 89.4%
2dwcB02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.60 41.0 4.49e-01 76.0% 91.5%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 54.0 4.70e-01 100.0% 80.7%
2mq8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.60 54.0 4.75e-01 100.0% 75.0%
1rlhA02 3.40.1520.10 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like 0.60 52.0 4.79e-01 100.0% 90.1%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 44.0 4.34e-01 78.7% 91.1%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.60 47.0 4.12e-01 85.3% 77.5%
3qjlA01 3.30.70.1890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 53.0 4.55e-01 100.0% 89.3%
2al3A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 42.0 4.24e-01 77.3% 89.5%
1kvkA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.58 51.0 4.12e-01 100.0% 90.5%
2iiiA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.58 50.0 4.33e-01 100.0% 76.7%
2wyqA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 41.0 4.14e-01 77.3% 89.6%
2ahoB03 3.30.70.1130 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha 0.57 50.0 4.77e-01 100.0% 93.2%
1uc8A02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.57 40.0 4.38e-01 77.3% 100.0%
1fnoA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 49.0 4.39e-01 100.0% 93.6%
2yqrA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.56 49.0 4.43e-01 100.0% 81.6%
3v0dA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 46.0 3.78e-01 92.0% 93.7%
6hfxA01 3.30.70.3040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 48.0 4.37e-01 98.7% 96.2%
2h5eA03 3.30.70.3280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III 0.55 42.0 3.52e-01 100.0% 46.0%
2pgcA02 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 47.0 4.27e-01 100.0% 75.5%
5b08A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 47.0 4.36e-01 100.0% 84.0%
7qu9A01 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.54 46.0 2.88e-01 100.0% 22.1%
5ixuA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 47.0 4.29e-01 100.0% 81.4%
2cpiA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 47.0 4.63e-01 100.0% 95.1%
3bf4A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 45.0 4.23e-01 100.0% 88.9%
5k9fA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 46.0 4.20e-01 100.0% 78.6%
2nrqA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.53 45.0 3.79e-01 100.0% 81.8%
1iw4A00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.53 36.0 3.99e-01 77.3% 96.4%
5ujeA01 3.30.1760.10 Alpha Beta › 2-Layer Sandwich › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2 › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2 0.52 42.0 3.71e-01 89.3% 99.1%
8t5tA01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.52 37.0 2.83e-01 76.0% 90.8%
3v76A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 41.0 3.85e-01 88.0% 82.2%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5064118 322.1.1.0 a+b two layers › HPr-like › HPr-like › HPr-like 0.84 78.0 7.34e-01 100.0% 90.9%
4103307 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.83 76.0 7.31e-01 100.0% 94.1%
3588312 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.82 76.0 7.21e-01 100.0% 90.9%
4963717 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.82 76.0 7.13e-01 100.0% 91.1%
4568147 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.82 75.0 7.10e-01 100.0% 89.9%
3164579 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.82 76.0 6.68e-01 100.0% 79.0%
4991 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.81 75.0 7.07e-01 100.0% 90.9%
3945048 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.81 74.0 7.11e-01 100.0% 94.1%
4990 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.80 74.0 7.12e-01 100.0% 94.0%
3972112 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.80 74.0 7.08e-01 100.0% 95.3%
2879452 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.80 73.0 7.01e-01 100.0% 95.2%
4008836 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.79 72.0 6.92e-01 100.0% 96.5%
4009784 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.78 70.0 6.64e-01 100.0% 95.6%
3978801 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.78 71.0 6.80e-01 100.0% 94.1%
3979258 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.78 70.0 6.62e-01 100.0% 95.6%
3972149 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.78 70.0 6.87e-01 98.7% 97.5%
3948410 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.77 69.0 6.55e-01 100.0% 90.0%
3626407 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.74 59.0 6.33e-01 100.0% 98.5%
4153244 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.71 55.0 5.74e-01 100.0% 90.0%
3824515 327.11.2.11 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1_3 0.70 61.0 5.64e-01 100.0% 90.0%
4006107 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.70 55.0 5.51e-01 100.0% 85.3%
3645896 327.11.2.11 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1_3 0.69 60.0 5.49e-01 100.0% 91.0%
3942221 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 55.0 5.53e-01 100.0% 88.0%
5013331 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.68 53.0 5.63e-01 100.0% 96.9%
4099186 219.1.1.21 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C58 0.68 50.0 3.78e-01 80.0% 52.6%
4998201 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.66 54.0 5.26e-01 100.0% 81.2%
3497053 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.63 56.0 5.06e-01 100.0% 81.0%
3721482 304.6.1.1 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C 0.63 56.0 3.77e-01 100.0% 36.5%
5009565 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 57.0 4.72e-01 100.0% 93.8%
4978093 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.62 55.0 4.61e-01 100.0% 70.0%
5049587 304.6.1.0 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.62 55.0 3.76e-01 100.0% 34.2%
5000153 304.107.1.0 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.61 55.0 5.34e-01 100.0% 91.6%
4996282 304.6.1.1 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C 0.60 53.0 3.78e-01 100.0% 35.2%
5050847 304.3.1.12 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › PF27530 0.60 52.0 4.82e-01 100.0% 86.0%
3992045 221.1.1.40 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › TUG-UBL1 0.60 42.0 4.47e-01 74.7% 98.5%
5026235 304.165.1.5 a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 › HVO_A0563_N 0.59 53.0 4.27e-01 100.0% 90.3%
5004099 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.59 49.0 3.71e-01 98.7% 84.2%
4258815 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.59 53.0 4.68e-01 100.0% 84.5%
3228368 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.59 52.0 4.70e-01 100.0% 77.1%
3595211 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.59 50.0 4.83e-01 100.0% 85.9%
3714160 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.58 49.0 4.67e-01 98.7% 80.0%
3479658 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.58 52.0 4.91e-01 100.0% 95.6%
4928832 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.58 48.0 3.58e-01 98.7% 84.9%
3499719 4261.1.1.2 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › BK_channel_a 0.58 49.0 4.25e-01 100.0% 61.6%
3483514 4261.1.1.0 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.58 49.0 4.24e-01 100.0% 61.6%
3490000 329.1.1.0 a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain 0.58 50.0 4.47e-01 100.0% 83.6%
5065071 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.57 48.0 3.64e-01 100.0% 85.2%
5014594 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.57 47.0 3.57e-01 97.3% 86.2%
3927045 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.57 47.0 4.06e-01 92.0% 69.2%
4977475 210.1.3.0 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.57 47.0 3.59e-01 100.0% 87.6%
3949363 12.1.1.99 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › T6SS_TssF 0.56 48.0 4.08e-01 98.7% 89.2%
149860 11.2.1.8 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.56 46.0 3.78e-01 90.7% 93.7%
3964448 304.44.1.2 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › PriA_C 0.56 49.0 4.69e-01 100.0% 94.4%
4484920 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 42.0 3.94e-01 82.7% 96.8%
3838763 304.44.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 0.55 48.0 4.68e-01 100.0% 92.9%
5032272 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.55 46.0 3.55e-01 100.0% 86.7%
3474713 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.54 49.0 4.57e-01 100.0% 84.2%
4963528 223.2.1.63 a+b three layers › Profilin-like › profilin-like › profilin-like › DUF7522 0.54 44.0 3.68e-01 90.7% 93.3%
4411830 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.54 45.0 4.26e-01 100.0% 76.8%
4943395 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 36.0 2.79e-01 85.3% 33.5%
3936915 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.50 39.0 3.37e-01 89.3% 100.0%